Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004110A_C02 KMC004110A_c02
(737 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_388802.1| similar to hypothetical proteins [Bacillus subt... 33 3.2
ref|NP_189576.1| hypothetical protein; protein id: At3g29300.1 [... 33 5.5
dbj|BAB03126.1| gene_id:MMF24.5~unknown protein [Arabidopsis tha... 33 5.5
ref|NP_113563.1| testis expressed gene 14 [Mus musculus] gi|1360... 32 7.2
ref|NP_569905.1| CG12773-PA [Drosophila melanogaster] gi|7511931... 32 9.4
>ref|NP_388802.1| similar to hypothetical proteins [Bacillus subtilis]
gi|1724014|sp|P54604|YHCT_BACSU Hypothetical protein
yhcT gi|7449278|pir||H69823 conserved hypothetical
protein yhcT - Bacillus subtilis
gi|1239996|emb|CAA65704.1| hypothetical protein
[Bacillus subtilis] gi|2633244|emb|CAB12749.1| yhcT
[Bacillus subtilis subsp. subtilis str. 168]
Length = 302
Score = 33.5 bits (75), Expect = 3.2
Identities = 15/29 (51%), Positives = 21/29 (71%)
Frame = -3
Query: 594 RKGDRVFVERRSSKSSSSTPENDMLDYLF 508
+KGDRVF++ + S++SS PE LD LF
Sbjct: 59 KKGDRVFIDLQESEASSVIPEYGELDILF 87
>ref|NP_189576.1| hypothetical protein; protein id: At3g29300.1 [Arabidopsis
thaliana]
Length = 213
Score = 32.7 bits (73), Expect = 5.5
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 473 YRIPSSQPNYLEKR*SSMSFSGVEDEDFDERLSTNTLSP 589
+ P S P+ LE SS S SG ED D +ST TL+P
Sbjct: 140 FETPESSPSRLETGESSSSSSGEEDNDHIIEVSTPTLTP 178
>dbj|BAB03126.1| gene_id:MMF24.5~unknown protein [Arabidopsis thaliana]
Length = 221
Score = 32.7 bits (73), Expect = 5.5
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 473 YRIPSSQPNYLEKR*SSMSFSGVEDEDFDERLSTNTLSP 589
+ P S P+ LE SS S SG ED D +ST TL+P
Sbjct: 148 FETPESSPSRLETGESSSSSSGEEDNDHIIEVSTPTLTP 186
>ref|NP_113563.1| testis expressed gene 14 [Mus musculus]
gi|13603851|gb|AAK31963.1|AF285584_1 testis protein TEX14
[Mus musculus]
Length = 1232
Score = 32.3 bits (72), Expect = 7.2
Identities = 18/42 (42%), Positives = 24/42 (56%)
Frame = -3
Query: 615 EVED*KRRKGDRVFVERRSSKSSSSTPENDMLDYLFSR*LGW 490
+V + KR+K + + ERR S SS T E D L F + LGW
Sbjct: 1175 DVVEQKRKKKESIKPERRESDSSLGTLEEDELKPCFWKRLGW 1216
>ref|NP_569905.1| CG12773-PA [Drosophila melanogaster] gi|7511931|pir||T13617
hypothetical protein 8D8.3 - fruit fly (Drosophila
melanogaster) gi|2950398|emb|CAA17686.1|
/prediction=(method:''genscan'', version:''1.0'',
score:''294.38'')~/match=(desc:''THIAZIDE-SENSITIVE
SODIUM-CHLORIDE COTRANSPORTER (NA-CL SYMPORTER)'',
species:''HOMO SAPIENS (HUMAN)'',
ranges:(query:33174..33518,
target:SWISS-PROT::P55017:246..132, score:''258.00''),
(query:33015..33149, target:SWISS-PROT::P55017:304..260,
score:''75.00''), (query:32642..32761,
target:SWISS-PROT::P55017:378..339, score:''121.00''),
(query:32339..32503, target:SWISS-PROT::P55017:498..444,
score:''76.00''), (query:32122..>
gi|7290145|gb|AAF45609.1| CG12773-PA [Drosophila
melanogaster]
Length = 712
Score = 32.0 bits (71), Expect = 9.4
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 425 LEKNFPLQ*NRMVFSRYRIPSSQPNYLEKR*SSMSFSGVE-DEDFDERLSTNTLSPFLLF 601
L + F +Q R R+RI +S P+Y +R S+S +G + D F +R+ L
Sbjct: 458 LAQTFDIQEQRE--ERFRIQASSPSYETRRYGSVSDTGNDLDLLFPDRVRHKNL------ 509
Query: 602 QSSTSQNSPFNQNLPL 649
+ QNSP +Q +PL
Sbjct: 510 --QSPQNSPLHQTVPL 523
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,357,599
Number of Sequences: 1393205
Number of extensions: 12562532
Number of successful extensions: 25653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25641
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
