Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004108A_C01 KMC004108A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565170.1| expressed protein; protein id: At1g78140.1, sup... 69 2e-11
pir||F96810 hypothetical protein T11I11.8 [imported] - Arabidops... 69 2e-11
gb|EAA20883.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.0
gb|AAO51702.1| similar to Plasmodium falciparum. Hypothetical pr... 31 6.7
>ref|NP_565170.1| expressed protein; protein id: At1g78140.1, supported by cDNA:
30065. [Arabidopsis thaliana] gi|21592590|gb|AAM64539.1|
unknown [Arabidopsis thaliana]
gi|28393453|gb|AAO42148.1| unknown protein [Arabidopsis
thaliana] gi|28827348|gb|AAO50518.1| unknown protein
[Arabidopsis thaliana]
Length = 355
Score = 69.3 bits (168), Expect = 2e-11
Identities = 30/44 (68%), Positives = 38/44 (86%)
Frame = -3
Query: 495 IRQASGSYIFLSERELEDLCRACGLVGFKCIRNGPFVMISAAKP 364
I + SGS+IFL+ERELED+C+ACGLV F +RNGPF+M+SA KP
Sbjct: 311 IMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKP 354
>pir||F96810 hypothetical protein T11I11.8 [imported] - Arabidopsis thaliana
gi|12324257|gb|AAG52104.1|AC012680_15 hypothetical
protein; 38642-36701 [Arabidopsis thaliana]
Length = 317
Score = 69.3 bits (168), Expect = 2e-11
Identities = 30/44 (68%), Positives = 38/44 (86%)
Frame = -3
Query: 495 IRQASGSYIFLSERELEDLCRACGLVGFKCIRNGPFVMISAAKP 364
I + SGS+IFL+ERELED+C+ACGLV F +RNGPF+M+SA KP
Sbjct: 273 IMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKP 316
>gb|EAA20883.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 869
Score = 33.9 bits (76), Expect = 1.0
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 255 KPPAYNYLSKLSMQKRCSVKYVLKVASIAPEKSNLIQAWQQKSSQKGHF*CI 410
KPP +Y +K +Q + SV+YV + I P+ N + Q+K + HF CI
Sbjct: 713 KPPFLSYFNKNRIQNQNSVEYVSETRFIFPKNFN--ETLQEKGIKDIHFRCI 762
>gb|AAO51702.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 614
Score = 31.2 bits (69), Expect = 6.7
Identities = 19/87 (21%), Positives = 42/87 (47%), Gaps = 15/87 (17%)
Frame = -2
Query: 232 SYIYLFS*DYLHIMSWTDHPYTCKNSR---------------VTQMVKRKCHM*FIHLIF 98
S+ + + + +HI S T P K+S + +++K C+ I +I
Sbjct: 19 SFSFDLNENIVHIPSKTSAPIISKSSELFTPKKKVVVLEREIIKEVIKEVCNNNKIEIIE 78
Query: 97 QLSCPFAFDSYITNSSSSVTNYWNNEN 17
Q + + ++ + N+++++ NY+NN N
Sbjct: 79 QPNSQSSINNNLNNNNNNLNNYYNNNN 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,160,900
Number of Sequences: 1393205
Number of extensions: 7603325
Number of successful extensions: 15636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15634
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
