Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004107A_C03 KMC004107A_c03
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF80591.1|AF223420_1 xyloglucan endotransglycosylase XET2 [A... 219 2e-56
dbj|BAB86890.1| syringolide-induced protein 19-1-5 [Glycine max] 216 2e-55
emb|CAA10231.1| xyloglucan endotransglycosylase 1 [Fagus sylvatica] 214 6e-55
ref|NP_200564.1| xyloglucan endotransglycosylase (TCH4); protein... 210 9e-54
gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica] 208 3e-53
>gb|AAF80591.1|AF223420_1 xyloglucan endotransglycosylase XET2 [Asparagus officinalis]
Length = 284
Score = 219 bits (557), Expect = 2e-56
Identities = 99/132 (75%), Positives = 113/132 (85%)
Frame = -1
Query: 572 FSVDGTPIREFKNLESAGVPFPKNQPMRLTSSLWNADDWATRGGLVKTDWSKAPFTASYR 393
FSVDG PIR+FKN+ES GV FPK+QPM++ SSLWNADDWATRGGL+KTDW+KAPFTASYR
Sbjct: 152 FSVDGIPIRDFKNMESRGVAFPKSQPMKIYSSLWNADDWATRGGLIKTDWTKAPFTASYR 211
Query: 392 NFNANNACVWSGGKSSCKSNSPSSASGSASWLKQELDSTGYQRLRWVQKNYMVYNYCADK 213
NFNA NACVWS G S+C S SAS S +WL +ELDST +R+RWVQKNYM+YNYCAD
Sbjct: 212 NFNA-NACVWSAGTSTCSSKKSPSASPSNAWLNEELDSTRQERMRWVQKNYMIYNYCADL 270
Query: 212 KRFPQGLPTECT 177
KRFPQGLP EC+
Sbjct: 271 KRFPQGLPPECS 282
>dbj|BAB86890.1| syringolide-induced protein 19-1-5 [Glycine max]
Length = 285
Score = 216 bits (549), Expect = 2e-55
Identities = 99/131 (75%), Positives = 115/131 (87%)
Frame = -1
Query: 572 FSVDGTPIREFKNLESAGVPFPKNQPMRLTSSLWNADDWATRGGLVKTDWSKAPFTASYR 393
FSVDG+PIREFKN+ES GVPFPKNQ MR+ SSLWNADDWATRGGLVKTDW++APFTASYR
Sbjct: 154 FSVDGSPIREFKNMESKGVPFPKNQAMRIYSSLWNADDWATRGGLVKTDWTQAPFTASYR 213
Query: 392 NFNANNACVWSGGKSSCKSNSPSSASGSASWLKQELDSTGYQRLRWVQKNYMVYNYCADK 213
NFNA NAC S G SSC SN+PSS++ + WL +ELDST +RL+WVQKNYM+YNYC+D
Sbjct: 214 NFNA-NACTMSSGTSSCGSNNPSSSNNNV-WLSEELDSTDQERLKWVQKNYMIYNYCSDT 271
Query: 212 KRFPQGLPTEC 180
+RFPQGLP+EC
Sbjct: 272 QRFPQGLPSEC 282
>emb|CAA10231.1| xyloglucan endotransglycosylase 1 [Fagus sylvatica]
Length = 292
Score = 214 bits (545), Expect = 6e-55
Identities = 96/131 (73%), Positives = 110/131 (83%)
Frame = -1
Query: 572 FSVDGTPIREFKNLESAGVPFPKNQPMRLTSSLWNADDWATRGGLVKTDWSKAPFTASYR 393
FSVDGTPIREFKN ES GVP PK QPMRL SSLWNADDWATRGGL+KTDW++ PFTASYR
Sbjct: 158 FSVDGTPIREFKNSESIGVPIPKKQPMRLYSSLWNADDWATRGGLLKTDWARTPFTASYR 217
Query: 392 NFNANNACVWSGGKSSCKSNSPSSASGSASWLKQELDSTGYQRLRWVQKNYMVYNYCADK 213
NFNA AC+WS G+S+C +NS SS S + +WLK++LD T +RL+WVQKNYM+YNYC D
Sbjct: 218 NFNA-RACLWSSGESTCTANSQSSTSNNNAWLKEDLDFTRQERLKWVQKNYMIYNYCTDT 276
Query: 212 KRFPQGLPTEC 180
KRFPQG P EC
Sbjct: 277 KRFPQGFPPEC 287
>ref|NP_200564.1| xyloglucan endotransglycosylase (TCH4); protein id: At5g57560.1,
supported by cDNA: gi_14194112, supported by cDNA:
gi_15450688, supported by cDNA: gi_15777882, supported
by cDNA: gi_17386135, supported by cDNA: gi_2952472
[Arabidopsis thaliana] gi|25313554|pir||T52097
xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-)
[imported] - Arabidopsis thaliana
gi|886116|gb|AAA92363.1| TCH4 protein
gi|2952473|gb|AAC05572.1| xyloglucan
endotransglycosylase related protein [Arabidopsis
thaliana] gi|9758317|dbj|BAB08791.1| TCH4 protein
[Arabidopsis thaliana]
gi|14194113|gb|AAK56251.1|AF367262_1 AT5g57560/MUA2_13
[Arabidopsis thaliana] gi|15450689|gb|AAK96616.1|
AT5g57560/MUA2_13 [Arabidopsis thaliana]
gi|15777883|gb|AAL05902.1| AT5g57560/MUA2_13
[Arabidopsis thaliana]
gi|17386136|gb|AAL38614.1|AF446881_1 AT5g57560/MUA2_13
[Arabidopsis thaliana]
Length = 284
Score = 210 bits (535), Expect = 9e-54
Identities = 97/131 (74%), Positives = 107/131 (81%)
Frame = -1
Query: 572 FSVDGTPIREFKNLESAGVPFPKNQPMRLTSSLWNADDWATRGGLVKTDWSKAPFTASYR 393
F+VDGTPIREFKN+ES G FPKN+PMR+ SSLWNADDWATRGGLVKTDWSKAPFTASYR
Sbjct: 153 FTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYR 212
Query: 392 NFNANNACVWSGGKSSCKSNSPSSASGSASWLKQELDSTGYQRLRWVQKNYMVYNYCADK 213
F ACVWS GKSSC N+ + + SWL QELDST QR+RWVQ+NYM+YNYC D
Sbjct: 213 GFQ-QEACVWSNGKSSC-PNASKQGTTTGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDA 270
Query: 212 KRFPQGLPTEC 180
KRFPQGLP EC
Sbjct: 271 KRFPQGLPKEC 281
>gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica]
Length = 282
Score = 208 bits (530), Expect = 3e-53
Identities = 98/132 (74%), Positives = 107/132 (80%)
Frame = -1
Query: 572 FSVDGTPIREFKNLESAGVPFPKNQPMRLTSSLWNADDWATRGGLVKTDWSKAPFTASYR 393
FSVDGTPIREFKNLES GV FPK+Q M + SSLWNADDWATRGGLVKTDWSKAPFTASYR
Sbjct: 154 FSVDGTPIREFKNLESKGVSFPKDQGMWIYSSLWNADDWATRGGLVKTDWSKAPFTASYR 213
Query: 392 NFNANNACVWSGGKSSCKSNSPSSASGSASWLKQELDSTGYQRLRWVQKNYMVYNYCADK 213
NFNA AC WS G S C S SP+ +SWL Q LDSTG +R++WVQKNYM+YNYC D
Sbjct: 214 NFNA-QACTWSSGTSRCPSKSPN----ESSWLTQSLDSTGQERIKWVQKNYMIYNYCRDT 268
Query: 212 KRFPQGLPTECT 177
KRFPQG P EC+
Sbjct: 269 KRFPQGFPPECS 280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,213,630
Number of Sequences: 1393205
Number of extensions: 11565357
Number of successful extensions: 34648
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 33240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34480
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
