Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004106A_C01 KMC004106A_c01
(768 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO03579.1| cellulose synthase-like protein D4 [Populus tremu... 192 6e-48
ref|NP_186955.1| putative cellulose synthase catalytic subunit; ... 189 5e-47
ref|NP_197193.1| cellulose synthase catalytic subunit -like prot... 186 3e-46
dbj|BAA93027.1| Similar to Arabidopsis thaliana DNA chromosome 4... 182 6e-45
gb|AAL58185.1|AC027037_7 putative cellulose synthase [Oryza sativa] 179 3e-44
>gb|AAO03579.1| cellulose synthase-like protein D4 [Populus tremuloides]
Length = 1104
Score = 192 bits (487), Expect = 6e-48
Identities = 92/100 (92%), Positives = 94/100 (94%)
Frame = -2
Query: 767 LMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRG 588
LMIPPITIMMVNLIAIAVG SRTIYS IPQWSRLLGGVFFSFWVL HLYPFAKGLMGRRG
Sbjct: 1005 LMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRG 1064
Query: 587 RTPTIVYVWSGLIAITISLLWVAINPPQGANEIGGSFQFP 468
RTPTIV+VWSGLIAITISLLWVAINPP G +IGGSFQFP
Sbjct: 1065 RTPTIVFVWSGLIAITISLLWVAINPPSGTTQIGGSFQFP 1104
>ref|NP_186955.1| putative cellulose synthase catalytic subunit; protein id:
At3g03050.1, supported by cDNA: gi_12619787, supported by
cDNA: gi_13430535 [Arabidopsis thaliana]
gi|6714431|gb|AAF26119.1|AC012328_22 putative cellulose
synthase catalytic subunit [Arabidopsis thaliana]
gi|12619788|gb|AAG60543.1|AF232907_1 cellulose
synthase-like CSLD3 [Arabidopsis thaliana]
gi|13430536|gb|AAK25890.1|AF360180_1 putative cellulose
synthase catalytic subunit [Arabidopsis thaliana]
gi|14532744|gb|AAK64073.1| putative cellulose synthase
catalytic subunit [Arabidopsis thaliana]
gi|25136916|emb|CAC82909.1| cellulose synthase-like
protein [Arabidopsis thaliana]
Length = 1145
Score = 189 bits (479), Expect = 5e-47
Identities = 89/100 (89%), Positives = 94/100 (94%)
Frame = -2
Query: 767 LMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRG 588
LMIPPITIMMVNLIAIAVG SRTIYS IPQWS+L+GGVFFSFWVL HLYPFAKGLMGRRG
Sbjct: 1046 LMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRG 1105
Query: 587 RTPTIVYVWSGLIAITISLLWVAINPPQGANEIGGSFQFP 468
RTPTIVYVWSGL+AITISLLWVAINPP G+ +IGGSF FP
Sbjct: 1106 RTPTIVYVWSGLVAITISLLWVAINPPAGSTQIGGSFTFP 1145
>ref|NP_197193.1| cellulose synthase catalytic subunit -like protein; protein id:
At5g16910.1 [Arabidopsis thaliana]
gi|11357224|pir||T51546 cellulose synthase catalytic
subunit-like protein - Arabidopsis thaliana
gi|9755692|emb|CAC01704.1| cellulose synthase catalytic
subunit-like protein [Arabidopsis thaliana]
Length = 1145
Score = 186 bits (472), Expect = 3e-46
Identities = 87/100 (87%), Positives = 93/100 (93%)
Frame = -2
Query: 767 LMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRG 588
LMIPPITI+MVNLIAIAVG SRTIYS +PQWS+L+GGVFFSFWVL HLYPFAKGLMGRRG
Sbjct: 1046 LMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRG 1105
Query: 587 RTPTIVYVWSGLIAITISLLWVAINPPQGANEIGGSFQFP 468
RTPTIVYVWSGL+AITISLLWVAINPP G EIGG+F FP
Sbjct: 1106 RTPTIVYVWSGLVAITISLLWVAINPPAGNTEIGGNFSFP 1145
>dbj|BAA93027.1| Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10;
putative protein. (AL035538) [Oryza sativa (japonica
cultivar-group)]
Length = 1170
Score = 182 bits (461), Expect = 6e-45
Identities = 87/100 (87%), Positives = 92/100 (92%)
Frame = -2
Query: 767 LMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRG 588
LMIPPI IMMVNLIAIAVG SRTIYS IPQWS+LLGGVFFSFWVL HLYPFAKGLMGRRG
Sbjct: 1071 LMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRG 1130
Query: 587 RTPTIVYVWSGLIAITISLLWVAINPPQGANEIGGSFQFP 468
RTPTIV+VWSGL+AITISLLWVAINPP ++IGGSF FP
Sbjct: 1131 RTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170
>gb|AAL58185.1|AC027037_7 putative cellulose synthase [Oryza sativa]
Length = 1127
Score = 179 bits (455), Expect = 3e-44
Identities = 84/102 (82%), Positives = 94/102 (91%), Gaps = 2/102 (1%)
Frame = -2
Query: 767 LMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRG 588
LMIPP+TI+M+NL+AIAVG SRTIYSTIPQWS+LLGGVFFSFWVL HLYPFAKGLMGRRG
Sbjct: 1026 LMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRG 1085
Query: 587 RTPTIVYVWSGLIAITISLLWVAINPP--QGANEIGGSFQFP 468
RTPTIVYVWSGL+AITISLLW+AI PP Q +++GGSF FP
Sbjct: 1086 RTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,385,951
Number of Sequences: 1393205
Number of extensions: 14251178
Number of successful extensions: 31159
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 29862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31135
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
