Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004105A_C01 KMC004105A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 ... 68 6e-11
ref|NP_683270.1| pre-mRNA splicing factor SF2 (SR1 protein); pro... 65 4e-10
pir||S71185 splicing factor SF-2 homolog - Arabidopsis thaliana ... 65 4e-10
gb|AAD52609.1|AF173640_1 splicing factor SR1 [Arabidopsis thaliana] 65 4e-10
gb|AAA98076.1| nuclear protein 62 6e-09
>gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 [Arabidopsis thaliana]
Length = 295
Score = 68.2 bits (165), Expect = 6e-11
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 8/91 (8%)
Frame = -3
Query: 520 SPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSAS---PQR 350
S RS ++SP++S SRSRSRSRS RS S+S R+KSP++ + RRS S +
Sbjct: 200 SSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKS 259
Query: 349 RSPSPQR-----RSASRSPSRSRSRSQSLSR 272
RSPSP + R+ SRS SRSRSRS+S S+
Sbjct: 260 RSPSPDKKKSPPRAMSRSKSRSRSRSRSPSK 290
Score = 51.2 bits (121), Expect = 8e-06
Identities = 37/83 (44%), Positives = 46/83 (54%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S RS ++ +S SRSRS SRS S + SKSP R + S S RS SP ++
Sbjct: 215 SRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSP---RRSLSRSISKS---RSPSPDKKK 268
Query: 343 PSPQRRSASRSPSRSRSRSQSLS 275
P+ S S+S SRSRSRS S S
Sbjct: 269 SPPRAMSRSKSRSRSRSRSPSKS 291
Score = 42.0 bits (97), Expect = 0.005
Identities = 32/73 (43%), Positives = 40/73 (53%), Gaps = 3/73 (4%)
Frame = -3
Query: 481 SRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQR---RSPSPQRRSASRS 311
+R R + SRSRS+SP R++S R + RS S R RS SP R+ S+S
Sbjct: 189 ARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP-RKDLSKS 247
Query: 310 PSRSRSRSQSLSR 272
P RS SRS S SR
Sbjct: 248 PRRSLSRSISKSR 260
Score = 36.6 bits (83), Expect = 0.20
Identities = 31/89 (34%), Positives = 40/89 (44%)
Frame = -3
Query: 547 AKEISEG*SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRR 368
++ +S S + +KSP +S SRS S+SR SP P + KSP
Sbjct: 231 SRSLSRSKSPRKDLSKSPRRSLSRSISKSR----------SPSPDKKKSP---------- 270
Query: 367 SASPQRRSPSPQRRSASRSPSRSRSRSQS 281
P RS SRS SRSRS S+S
Sbjct: 271 --------PRAMSRSKSRSRSRSRSPSKS 291
Score = 35.8 bits (81), Expect = 0.35
Identities = 20/43 (46%), Positives = 25/43 (57%)
Frame = -3
Query: 544 KEISEG*SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLP 416
+ +S S RSP+ KS R+ SRS+S S SRSRS S P
Sbjct: 250 RSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSP 292
>ref|NP_683270.1| pre-mRNA splicing factor SF2 (SR1 protein); protein id:
At1g02840.2, supported by cDNA: 19681., supported by
cDNA: gi_166843 [Arabidopsis thaliana]
gi|3929368|sp|O22315|SFR1_ARATH Pre-mRNA splicing factor
SF2 (SR1 protein) gi|25386574|pir||F86158 alternative
splicing factor SF2a [imported] - Arabidopsis thaliana
gi|2443472|gb|AAB71385.1| ASF/SF2 homolog [Arabidopsis
thaliana] gi|6056417|gb|AAF02881.1|AC009525_15
alternative splicing factor SF2a [Arabidopsis thaliana]
gi|21554051|gb|AAM63132.1| SF2/ASF-like splicing
modulator Srp30, putative [Arabidopsis thaliana]
gi|26451794|dbj|BAC42991.1| putative ribonucleoprotein
SF-2 [Arabidopsis thaliana]
Length = 303
Score = 65.5 bits (158), Expect = 4e-10
Identities = 41/78 (52%), Positives = 52/78 (66%)
Frame = -3
Query: 514 RSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRSPSP 335
RSP++ + S SRSRSR RS+S SRSRS+S R++SPK S+ R A RSP P
Sbjct: 202 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRS----RSRSPKAKSSR--RSPAKSTSRSPGP 255
Query: 334 QRRSASRSPSRSRSRSQS 281
+ +S S SP RSRSRS+S
Sbjct: 256 RSKSRSPSPRRSRSRSRS 273
Score = 54.3 bits (129), Expect = 9e-07
Identities = 43/92 (46%), Positives = 51/92 (54%), Gaps = 1/92 (1%)
Frame = -3
Query: 547 AKEISEG*SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRR 368
+++ S S RS +KS ++S RS SRSRS S SRSRS R K S SP R
Sbjct: 197 SRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR 256
Query: 367 SASPQRRSPSPQR-RSASRSPSRSRSRSQSLS 275
S S RSPSP+R RS SRSP S + S S
Sbjct: 257 SKS---RSPSPRRSRSRSRSPLPSVQKEGSKS 285
Score = 50.1 bits (118), Expect = 2e-05
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = -3
Query: 544 KEISEG*SSPRSPAKSP-AKSASRSRSRSRSLS-GSRSRSKSPLPLRNKSPKRCSASPIR 371
+ +S S RS ++SP AKS+ RS ++S S S G RS+S+SP P R++S R ++
Sbjct: 220 RSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQ 279
Query: 370 RSASPQRRSPSPQRRSA-SRSPSR 302
+ S PSP + +RSPSR
Sbjct: 280 KEGSKSPSKPSPAKSPIHTRSPSR 303
>pir||S71185 splicing factor SF-2 homolog - Arabidopsis thaliana
gi|166844|gb|AAA32856.1| ribonucleoprotein
gi|1582992|prf||2119375A Ser/Arg-rich protein
Length = 303
Score = 65.5 bits (158), Expect = 4e-10
Identities = 41/78 (52%), Positives = 52/78 (66%)
Frame = -3
Query: 514 RSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRSPSP 335
RSP++ + S SRSRSR RS+S SRSRS+S R++SPK S+ R A RSP P
Sbjct: 202 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRS----RSRSPKAKSSR--RSPAKSTSRSPGP 255
Query: 334 QRRSASRSPSRSRSRSQS 281
+ +S S SP RSRSRS+S
Sbjct: 256 RSKSRSPSPRRSRSRSRS 273
Score = 54.3 bits (129), Expect = 9e-07
Identities = 43/92 (46%), Positives = 51/92 (54%), Gaps = 1/92 (1%)
Frame = -3
Query: 547 AKEISEG*SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRR 368
+++ S S RS +KS ++S RS SRSRS S SRSRS R K S SP R
Sbjct: 197 SRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR 256
Query: 367 SASPQRRSPSPQR-RSASRSPSRSRSRSQSLS 275
S S RSPSP+R RS SRSP S + S S
Sbjct: 257 SKS---RSPSPRRSRSRSRSPLPSVQKEGSKS 285
Score = 50.1 bits (118), Expect = 2e-05
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = -3
Query: 544 KEISEG*SSPRSPAKSP-AKSASRSRSRSRSLS-GSRSRSKSPLPLRNKSPKRCSASPIR 371
+ +S S RS ++SP AKS+ RS ++S S S G RS+S+SP P R++S R ++
Sbjct: 220 RSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQ 279
Query: 370 RSASPQRRSPSPQRRSA-SRSPSR 302
+ S PSP + +RSPSR
Sbjct: 280 KEGSKSPSKPSPAKSPIHTRSPSR 303
>gb|AAD52609.1|AF173640_1 splicing factor SR1 [Arabidopsis thaliana]
Length = 307
Score = 65.5 bits (158), Expect = 4e-10
Identities = 41/78 (52%), Positives = 52/78 (66%)
Frame = -3
Query: 514 RSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRSPSP 335
RSP++ + S SRSRSR RS+S SRSRS+S R++SPK S+ R A RSP P
Sbjct: 206 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRS----RSRSPKAKSSR--RSPAKSTSRSPGP 259
Query: 334 QRRSASRSPSRSRSRSQS 281
+ +S S SP RSRSRS+S
Sbjct: 260 RSKSRSPSPRRSRSRSRS 277
Score = 54.3 bits (129), Expect = 9e-07
Identities = 43/92 (46%), Positives = 51/92 (54%), Gaps = 1/92 (1%)
Frame = -3
Query: 547 AKEISEG*SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRR 368
+++ S S RS +KS ++S RS SRSRS S SRSRS R K S SP R
Sbjct: 201 SRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR 260
Query: 367 SASPQRRSPSPQR-RSASRSPSRSRSRSQSLS 275
S S RSPSP+R RS SRSP S + S S
Sbjct: 261 SKS---RSPSPRRSRSRSRSPLPSVQKEGSKS 289
Score = 50.1 bits (118), Expect = 2e-05
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = -3
Query: 544 KEISEG*SSPRSPAKSP-AKSASRSRSRSRSLS-GSRSRSKSPLPLRNKSPKRCSASPIR 371
+ +S S RS ++SP AKS+ RS ++S S S G RS+S+SP P R++S R ++
Sbjct: 224 RSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQ 283
Query: 370 RSASPQRRSPSPQRRSA-SRSPSR 302
+ S PSP + +RSPSR
Sbjct: 284 KEGSKSPSKPSPAKSPIHTRSPSR 307
>gb|AAA98076.1| nuclear protein
Length = 505
Score = 61.6 bits (148), Expect = 6e-09
Identities = 36/78 (46%), Positives = 48/78 (61%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S RS +KSPAKSAS R+ S S S RSKSP +++ R + +RSAS +RRS
Sbjct: 10 SRSRSRSKSPAKSASPKRAASPKASKSPKRSKSPKAGKSRKRSRSRSKSSKRSASKKRRS 69
Query: 343 PSPQRRSASRSPSRSRSR 290
SP++RS S+ S S+ R
Sbjct: 70 RSPKKRSKSKKRSASKKR 87
Score = 52.0 bits (123), Expect = 5e-06
Identities = 36/84 (42%), Positives = 53/84 (62%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + +KS +SAS+ RS+SR S S+ RSKS R +S + + +RSAS ++RS
Sbjct: 227 SASKKRSKSRKRSASKKRSKSRKRSASKKRSKS----RKRSASKKRSKSRKRSAS-KKRS 281
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S ++RSAS+ S+SR RS S R
Sbjct: 282 KS-RKRSASKKRSKSRKRSASKKR 304
Score = 52.0 bits (123), Expect = 5e-06
Identities = 36/84 (42%), Positives = 53/84 (62%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + +KS +SAS+ RS+SR S S+ RSKS R +S + + +RSAS ++RS
Sbjct: 239 SASKKRSKSRKRSASKKRSKSRKRSASKKRSKS----RKRSASKKRSKSRKRSAS-KKRS 293
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S ++RSAS+ S+SR RS S R
Sbjct: 294 KS-RKRSASKKRSKSRKRSASKKR 316
Score = 52.0 bits (123), Expect = 5e-06
Identities = 36/84 (42%), Positives = 53/84 (62%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + +KS +SAS+ RS+SR S S+ RSKS R +S + + +RSAS ++RS
Sbjct: 215 SASKKRSKSRKRSASKKRSKSRKRSASKKRSKS----RKRSASKKRSKSRKRSAS-KKRS 269
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S ++RSAS+ S+SR RS S R
Sbjct: 270 KS-RKRSASKKRSKSRKRSASKKR 292
Score = 51.6 bits (122), Expect = 6e-06
Identities = 34/75 (45%), Positives = 49/75 (65%)
Frame = -3
Query: 514 RSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRSPSP 335
+SP +S + A +SR RSRS S S RS S R++SPK+ S S +RSAS +R+S P
Sbjct: 35 KSPKRSKSPKAGKSRKRSRSRSKSSKRSASK-KRRSRSPKKRSKSK-KRSASKKRKS-KP 91
Query: 334 QRRSASRSPSRSRSR 290
+++SAS+ S S+ R
Sbjct: 92 RKKSASKKRSASKKR 106
Score = 50.8 bits (120), Expect = 1e-05
Identities = 36/84 (42%), Positives = 50/84 (58%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
+SP++ +KSP +S S +SR S SRS+S R+ S KR S SP +RS S ++RS
Sbjct: 29 ASPKA-SKSPKRSKSPKAGKSRKRSRSRSKSSK----RSASKKRRSRSPKKRSKS-KKRS 82
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S +R+S R S S+ RS S R
Sbjct: 83 ASKKRKSKPRKKSASKKRSASKKR 106
Score = 49.7 bits (117), Expect = 2e-05
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + + S +SAS+ RS+SR S S+ RSKS R +S + + +RSAS ++RS
Sbjct: 203 SASKKRSHSRKRSASKKRSKSRKRSASKKRSKS----RKRSASKKRSKSRKRSAS-KKRS 257
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S ++RSAS+ S+SR RS S R
Sbjct: 258 KS-RKRSASKKRSKSRKRSASKKR 280
Score = 49.7 bits (117), Expect = 2e-05
Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRS---RSKSPLPLRNKSPKRCS-----ASPIRR 368
S RS + KS RSRSRS+S S S RS+SP R+KS KR + + P ++
Sbjct: 36 SPKRSKSPKAGKSRKRSRSRSKSSKRSASKKRRSRSP-KKRSKSKKRSASKKRKSKPRKK 94
Query: 367 SASPQR----------RSPSPQRRSASRSPSRSRSRSQSLSR 272
SAS +R RS S +R+SASR S S+ RS S R
Sbjct: 95 SASKKRSASKKRKSRKRSASKKRKSASRKRSTSKKRSASKKR 136
Score = 49.3 bits (116), Expect = 3e-05
Identities = 34/84 (40%), Positives = 44/84 (51%), Gaps = 2/84 (2%)
Frame = -3
Query: 520 SPRSPAKSPAKSASRSRSRSRSLSGSRSRSKS--PLPLRNKSPKRCSASPIRRSASPQRR 347
S + A KSASR RS S+ S S+ RSKS RNKS + S +RS S +R
Sbjct: 108 SRKRSASKKRKSASRKRSTSKKRSASKKRSKSRKRSASRNKSNNNTNNSAKKRSRSRKRS 167
Query: 346 SPSPQRRSASRSPSRSRSRSQSLS 275
+ + RS RS S+ RS S+ S
Sbjct: 168 ASKKRSRSRKRSASKKRSHSRKRS 191
Score = 49.3 bits (116), Expect = 3e-05
Identities = 32/83 (38%), Positives = 46/83 (54%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + +KS +SAS+ RS+SR S S+ RSKS R +S + + +RSAS +R
Sbjct: 263 SASKKRSKSRKRSASKKRSKSRKRSASKKRSKS----RKRSASKKRSKSRKRSASKKRSH 318
Query: 343 PSPQRRSASRSPSRSRSRSQSLS 275
+R S RS SR R S+ S
Sbjct: 319 SRKRRPSKKRSDSRKRRASKKRS 341
Score = 49.3 bits (116), Expect = 3e-05
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + +KS +SAS+ RS+SR S S+ RSKS R +S + + +RSAS ++RS
Sbjct: 251 SASKKRSKSRKRSASKKRSKSRKRSASKKRSKS----RKRSASKKRSKSRKRSAS-KKRS 305
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S ++RSAS+ S SR R S R
Sbjct: 306 KS-RKRSASKKRSHSRKRRPSKKR 328
Score = 48.9 bits (115), Expect = 4e-05
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + + S +SAS+ RS SR S S+ RSKS R +S + + +RSAS ++RS
Sbjct: 191 SASKKRSHSRKRSASKKRSHSRKRSASKKRSKS----RKRSASKKRSKSRKRSAS-KKRS 245
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S ++RSAS+ S+SR RS S R
Sbjct: 246 KS-RKRSASKKRSKSRKRSASKKR 268
Score = 48.9 bits (115), Expect = 4e-05
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
+S + ++S +SAS+ RSRSR S S+ RS S R +S + + +RSAS ++RS
Sbjct: 155 NSAKKRSRSRKRSASKKRSRSRKRSASKKRSHS----RKRSASKKRSHSRKRSAS-KKRS 209
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
S ++RSAS+ S+SR RS S R
Sbjct: 210 HS-RKRSASKKRSKSRKRSASKKR 232
Score = 48.5 bits (114), Expect = 5e-05
Identities = 36/83 (43%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
Frame = -3
Query: 520 SPRSPAKSPAKSASRSR-SRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
SP+ +KS +SAS+ R S+ R S S+ RS S + KS KR SAS R+SAS +R +
Sbjct: 71 SPKKRSKSKKRSASKKRKSKPRKKSASKKRSASK---KRKSRKR-SASKKRKSASRKRST 126
Query: 343 PSPQRRSASRSPSRSRSRSQSLS 275
+ S RS SR RS S++ S
Sbjct: 127 SKKRSASKKRSKSRKRSASRNKS 149
Score = 47.8 bits (112), Expect = 9e-05
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = -3
Query: 523 SSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRS 344
S+ + +KS +SAS+ RS+SR S S+ RSKS R+ S KR + R P ++
Sbjct: 275 SASKKRSKSRKRSASKKRSKSRKRSASKKRSKS--RKRSASKKRSHS----RKRRPSKKR 328
Query: 343 PSPQRRSASRSPSRSRSRSQSLSR 272
++R AS+ S SR RS S R
Sbjct: 329 SDSRKRRASKKRSHSRKRSASKKR 352
Score = 47.8 bits (112), Expect = 9e-05
Identities = 37/66 (56%), Positives = 46/66 (69%)
Frame = -3
Query: 469 SRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPQRRSPSPQRRSASRSPSRSRSR 290
S+SRS S SRSRSKSP ++ SPKR +ASP + S SP +RS SP+ A +S RSRSR
Sbjct: 4 SKSRSRSRSRSRSKSPA--KSASPKR-AASP-KASKSP-KRSKSPK---AGKSRKRSRSR 55
Query: 289 SQSLSR 272
S+S R
Sbjct: 56 SKSSKR 61
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,649,961
Number of Sequences: 1393205
Number of extensions: 10326514
Number of successful extensions: 94690
Number of sequences better than 10.0: 2480
Number of HSP's better than 10.0 without gapping: 52647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77434
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
