KMC004102A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC004102A_C01 KMC004102A_c01
ctttttttttttataaggaaatgtaatttttcccccacttgttattaggcacagtgtttg
aataaaagaacatttatcacGGAGATCATTATTATCAAGGAGTTAAAACAGAGAAAGTAG
CCTAACAGAAACCAAACTATAACAGCAAACATAACACCATTAGGAGAGCATATTGACATA
GCAGTGCACAAGTCTGTTTTTTTTATAATATACTATTATTTAAAGTAAACGTTAACTGGG
TAAATACATAGCAAATAGGAAATAGCAGAGACAGGGCAATTCCAAAGTCAAACTCCAAAG
CAACAGCCCATTATTCTATCATCATACCACAAGAACAGTGACTTGCATCCTTTTCCTTTT
CCATATCAAATTCTCAAGCGAACTGAGTAAGGTATTCATCCAGCGGGGGTGTACTCAACA
TCTGGAATACAAAGCAGAAGCCTCAAACCCAAAAGAAGGCTCGATCACAAAATGGTCGTG
GTCACCCTTCACGAAGCAGCGCGTGGTTGATCGATAGTATTATATTTGATTTGGAATAGG
TGCCTCTTTGAATGTCCTTTGAGCAGCTTCTCCTCAGGAATATGAACCTTCTCGACGGTC
TTGCCAATTTTCTTCTCCCATAAGGCAACAAGCTCGTTGAATGAGTAAATGTTCTTAGAG
GGCTTGATGTAGACAATCTTGTTGAGTGTTCTGGGGTCTTCCGCAGCTCTAATAGTGAAA
GTTCCAATGTCATCTTCCTTGTTGAAGACAGCTTTTTGATTGCCATCGCCGTAGATGAAG
AGTTTGTCTTTGGGAGGAG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004102A_C01 KMC004102A_c01
         (799 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG22740.1|AF282850_1 allergenic isoflavone reductase-like pr...   144  6e-39
gb|AAC05116.2| isoflavone reductase homolog Bet v 6.0101 [Betula...   144  6e-39
pir||T08106 2'-hydroxyisoflavone reductase (EC 1.3.1.45) - Europ...   144  6e-39
gb|AAC24001.1| isoflavone reductase related protein [Pyrus commu...   128  6e-35
gb|AAF64174.1|AF242491_1 phenylcoumaran benzylic ether reductase...   131  2e-34

>gb|AAG22740.1|AF282850_1 allergenic isoflavone reductase-like protein Bet v 6.0102 [Betula
           pendula]
          Length = 308

 Score =  144 bits (362), Expect(2) = 6e-39
 Identities = 64/80 (80%), Positives = 77/80 (96%)
 Frame = -3

Query: 797 PPKDKLFIYGDGNQKAVFNKEDDIGTFTIRAAEDPRTLNKIVYIKPSKNIYSFNELVALW 618
           PP++K+ I+GDGN +AVFNKEDDIGT+TIRA +DPRTLNKIVYIKP+KNIYSFNE+VALW
Sbjct: 171 PPREKVVIFGDGNARAVFNKEDDIGTYTIRAVDDPRTLNKIVYIKPAKNIYSFNEIVALW 230

Query: 617 EKKIGKTVEKVHIPEEKLLK 558
           EKKIGKT+EK+++PEEKLLK
Sbjct: 231 EKKIGKTLEKIYVPEEKLLK 250

 Score = 39.7 bits (91), Expect(2) = 6e-39
 Identities = 22/48 (45%), Positives = 27/48 (55%)
 Frame = -2

Query: 570 EAAQRTFKEAPIPNQI*YYRSTTRCFVKGDHDHFVIEPSFGFEASALY 427
           E   +  +E+PIP  +         FVKGDH +F IE SFG EAS LY
Sbjct: 246 EKLLKDIQESPIPINV-ILAINHSVFVKGDHTNFEIEASFGVEASELY 292

>gb|AAC05116.2| isoflavone reductase homolog Bet v 6.0101 [Betula pendula]
          Length = 300

 Score =  144 bits (362), Expect(2) = 6e-39
 Identities = 64/80 (80%), Positives = 77/80 (96%)
 Frame = -3

Query: 797 PPKDKLFIYGDGNQKAVFNKEDDIGTFTIRAAEDPRTLNKIVYIKPSKNIYSFNELVALW 618
           PP++K+ I+GDGN +AVFNKEDDIGT+TIRA +DPRTLNKIVYIKP+KNIYSFNE+VALW
Sbjct: 171 PPREKVVIFGDGNARAVFNKEDDIGTYTIRAVDDPRTLNKIVYIKPAKNIYSFNEIVALW 230

Query: 617 EKKIGKTVEKVHIPEEKLLK 558
           EKKIGKT+EK+++PEEKLLK
Sbjct: 231 EKKIGKTLEKIYVPEEKLLK 250

 Score = 39.7 bits (91), Expect(2) = 6e-39
 Identities = 22/48 (45%), Positives = 27/48 (55%)
 Frame = -2

Query: 570 EAAQRTFKEAPIPNQI*YYRSTTRCFVKGDHDHFVIEPSFGFEASALY 427
           E   +  +E+PIP  +         FVKGDH +F IE SFG EAS LY
Sbjct: 246 EKLLKDIQESPIPINV-ILAINHSVFVKGDHTNFEIEASFGVEASELY 292

>pir||T08106 2'-hydroxyisoflavone reductase (EC 1.3.1.45) - European white birch
          Length = 300

 Score =  144 bits (362), Expect(2) = 6e-39
 Identities = 64/80 (80%), Positives = 77/80 (96%)
 Frame = -3

Query: 797 PPKDKLFIYGDGNQKAVFNKEDDIGTFTIRAAEDPRTLNKIVYIKPSKNIYSFNELVALW 618
           PP++K+ I+GDGN +AVFNKEDDIGT+TIRA +DPRTLNKIVYIKP+KNIYSFNE+VALW
Sbjct: 171 PPREKVVIFGDGNARAVFNKEDDIGTYTIRAVDDPRTLNKIVYIKPAKNIYSFNEIVALW 230

Query: 617 EKKIGKTVEKVHIPEEKLLK 558
           EKKIGKT+EK+++PEEKLLK
Sbjct: 231 EKKIGKTLEKIYVPEEKLLK 250

 Score = 39.7 bits (91), Expect(2) = 6e-39
 Identities = 22/48 (45%), Positives = 27/48 (55%)
 Frame = -2

Query: 570 EAAQRTFKEAPIPNQI*YYRSTTRCFVKGDHDHFVIEPSFGFEASALY 427
           E   +  +E+PIP  +         FVKGDH +F IE SFG EAS LY
Sbjct: 246 EKLLKDIQESPIPINV-ILAINHSVFVKGDHTNFEIEASFGVEASELY 292

>gb|AAC24001.1| isoflavone reductase related protein [Pyrus communis]
          Length = 308

 Score =  128 bits (321), Expect(2) = 6e-35
 Identities = 56/79 (70%), Positives = 71/79 (88%)
 Frame = -3

Query: 794 PKDKLFIYGDGNQKAVFNKEDDIGTFTIRAAEDPRTLNKIVYIKPSKNIYSFNELVALWE 615
           P+DK+ I GDGN KA+FNKEDDIGT+TIRA +DPRTLNK++YI+P  N  SFNELV+LWE
Sbjct: 172 PRDKVVILGDGNPKAIFNKEDDIGTYTIRAVDDPRTLNKVLYIRPPANTISFNELVSLWE 231

Query: 614 KKIGKTVEKVHIPEEKLLK 558
           KKIGKT+E++++PEE+LLK
Sbjct: 232 KKIGKTLERIYVPEEQLLK 250

 Score = 42.0 bits (97), Expect(2) = 6e-35
 Identities = 22/48 (45%), Positives = 29/48 (59%)
 Frame = -2

Query: 570 EAAQRTFKEAPIPNQI*YYRSTTRCFVKGDHDHFVIEPSFGFEASALY 427
           E   +  +EA +P  +     +   FVKGDH +F IEPSFG EA+ALY
Sbjct: 246 EQLLKNIQEAAVPLNV-ILSISHAVFVKGDHTNFEIEPSFGVEATALY 292

>gb|AAF64174.1|AF242491_1 phenylcoumaran benzylic ether reductase homolog Fi1 [Forsythia x
           intermedia]
          Length = 308

 Score =  131 bits (330), Expect(2) = 2e-34
 Identities = 59/80 (73%), Positives = 72/80 (89%)
 Frame = -3

Query: 797 PPKDKLFIYGDGNQKAVFNKEDDIGTFTIRAAEDPRTLNKIVYIKPSKNIYSFNELVALW 618
           PP+DK+ I GDGN KAVFN+E DIGT+TI+A +DPRTLNKI+YIKP KNIYSFNELVALW
Sbjct: 171 PPRDKVIILGDGNAKAVFNEEHDIGTYTIKAVDDPRTLNKILYIKPPKNIYSFNELVALW 230

Query: 617 EKKIGKTVEKVHIPEEKLLK 558
           E KIGKT+EK+++ EE+L+K
Sbjct: 231 ENKIGKTLEKIYVQEEQLIK 250

 Score = 37.0 bits (84), Expect(2) = 2e-34
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = -2

Query: 558 RTFKEAPIPNQI*YYRSTTRCFVKGDHDHFVIEPSFGFEASALY 427
           +  +E+P P  I         FVKGD  +F IEPSFG EAS LY
Sbjct: 250 KQIEESPFPINI-VLAINHSVFVKGDLTNFKIEPSFGVEASELY 292

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 670,390,469
Number of Sequences: 1393205
Number of extensions: 14304017
Number of successful extensions: 35870
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 34433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35831
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40336047648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPD085g07_f AV775600 1 485
2 MPD087d01_f AV775710 103 603
3 MPD060f04_f AV774031 170 387
4 SPD099h11_f BP051942 176 705
5 SPD021e08_f BP045656 176 816
6 MF025a09_f BP029564 180 634
7 MPD054f05_f AV773639 180 687
8 MPD089f02_f AV775870 180 653
9 SPD060e11_f BP048780 180 760
10 MF012e05_f BP028874 180 680
11 SPD006a09_f BP044442 180 609
12 MF069c04_f BP031956 180 670
13 MR031e06_f BP078391 180 603
14 SPD031d09_f BP046462 180 641
15 MPD079h10_f AV775217 180 687
16 SPD026a11_f BP046027 183 712
17 SPD014a10_f BP045085 187 607
18 SPD007b03_f BP044529 187 736
19 SPD051h09_f BP048109 187 670
20 SPD065a11_f BP049156 187 737
21 MFB030g11_f BP036221 201 760
22 SPDL011b10_f BP052649 201 639
23 SPD030h11_f BP046424 201 767
24 MPD089f03_f AV775871 205 614
25 MPD041f12_f AV772815 209 530
26 MPD013g08_f AV770910 209 689
27 MR023e08_f BP077760 209 621
28 MR005b04_f BP076288 209 617
29 SPD084d04_f BP050703 209 641
30 SPD013d11_f BP045031 209 755
31 MFB029c08_f BP036102 209 741
32 SPD010d05_f BP044789 209 800
33 MPD036e02_f AV772460 209 734
34 MFBL032g09_f BP042884 209 733
35 SPD053f08_f BP048247 209 741
36 MPD018e04_f AV771246 209 789
37 SPD008a11_f BP044606 211 637
38 MPD046a08_f AV773095 211 754
39 SPD024b09_f BP045875 212 775
40 SPD043d03_f BP047419 212 760
41 MPD076e08_f AV774998 212 532
42 SPD005h05_f BP044427 212 776
43 SPD011d10_f BP044872 215 781
44 SPD073b04_f BP049811 218 774
45 MF054d08_f BP031142 218 737
46 SPD008d11_f BP044637 221 638
47 SPD009c12_f BP044704 226 608
48 SPD003e07_f BP044242 232 776




Lotus japonicus
Kazusa DNA Research Institute