Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004101A_C01 KMC004101A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190868.1| putative protein; protein id: At3g53000.1 [Arab... 102 3e-21
gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-... 67 2e-10
gb|AAO22780.1| unknown protein [Arabidopsis thaliana] 66 3e-10
ref|NP_176497.1| unknown protein; protein id: At1g63090.1 [Arabi... 66 3e-10
gb|AAK59472.2| unknown protein [Arabidopsis thaliana] 65 5e-10
>ref|NP_190868.1| putative protein; protein id: At3g53000.1 [Arabidopsis thaliana]
gi|11291045|pir||T47557 hypothetical protein F8J2.170 -
Arabidopsis thaliana gi|7529724|emb|CAB86904.1| putative
protein [Arabidopsis thaliana]
Length = 300
Score = 102 bits (254), Expect = 3e-21
Identities = 47/80 (58%), Positives = 61/80 (75%), Gaps = 1/80 (1%)
Frame = -1
Query: 574 CECCLDDTEHDEIYGCHKRGCWVDYKVGEFLVTESEPTTKVRFSMKPIDCTHSKGGLCVD 395
CE LDD E +E G HKRG W++Y+VGEF+V SEP+T++++SMK IDCTHSKGGLCVD
Sbjct: 219 CEYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVD 278
Query: 394 SVFIIP-SCLRDRKKSGFLK 338
SVFI P +++ K+ LK
Sbjct: 279 SVFINPIGDVKEHKRKAVLK 298
>gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 310
Score = 66.6 bits (161), Expect = 2e-10
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = -1
Query: 517 GCWVDYKVGEFLVTESEPTTKVRFSMKPIDCTHSKGGLCVDSVFIIP 377
G WV Y G+F+V++ + T K++FSM IDCTH+KGGLCVDS FI P
Sbjct: 248 GSWVLYHAGDFVVSKPDQTIKLKFSMAQIDCTHTKGGLCVDSAFIYP 294
>gb|AAO22780.1| unknown protein [Arabidopsis thaliana]
Length = 188
Score = 66.2 bits (160), Expect = 3e-10
Identities = 30/54 (55%), Positives = 40/54 (73%), Gaps = 1/54 (1%)
Frame = -1
Query: 517 GCWVDYKVGEFLVTESEPT-TKVRFSMKPIDCTHSKGGLCVDSVFIIPSCLRDR 359
G W Y G+F+V +S+ + TK++FSM IDCTH+KGGLCVDSV + PS +DR
Sbjct: 131 GNWSHYHAGDFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDR 184
>ref|NP_176497.1| unknown protein; protein id: At1g63090.1 [Arabidopsis thaliana]
gi|25366248|pir||C96656 unknown protein, 43836-42510
[imported] - Arabidopsis thaliana
gi|12323246|gb|AAG51598.1|AC010795_2 unknown protein;
43836-42510 [Arabidopsis thaliana]
Length = 289
Score = 66.2 bits (160), Expect = 3e-10
Identities = 30/54 (55%), Positives = 40/54 (73%), Gaps = 1/54 (1%)
Frame = -1
Query: 517 GCWVDYKVGEFLVTESEPT-TKVRFSMKPIDCTHSKGGLCVDSVFIIPSCLRDR 359
G W Y G+F+V +S+ + TK++FSM IDCTH+KGGLCVDSV + PS +DR
Sbjct: 232 GNWSHYHAGDFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDR 285
>gb|AAK59472.2| unknown protein [Arabidopsis thaliana]
Length = 269
Score = 65.5 bits (158), Expect = 5e-10
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 517 GCWVDYKVGEFLVTESEPTTKVRFSMKPIDCTHSKGGLCVDSVFIIP 377
G W Y VG+F VT + +T ++FSM IDCTH+KGGLC+DSV I+P
Sbjct: 212 GSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILP 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,216,786
Number of Sequences: 1393205
Number of extensions: 10363879
Number of successful extensions: 24694
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24686
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
