Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004100A_C01 KMC004100A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566966.1| expressed protein; protein id: At3g52500.1, sup... 138 5e-32
gb|AAL14384.1| AT3g52500/F22O6_120 [Arabidopsis thaliana] 138 5e-32
gb|AAK96597.1| AT3g52500/F22O6_120 [Arabidopsis thaliana] 135 4e-31
emb|CAD40869.1| OSJNBa0064H22.14 [Oryza sativa (japonica cultiva... 66 3e-10
ref|NP_567506.1| similar to chloroplast nucleoid DNA-binding pro... 66 4e-10
>ref|NP_566966.1| expressed protein; protein id: At3g52500.1, supported by cDNA:
gi_13430561, supported by cDNA: gi_15450891, supported
by cDNA: gi_16209646 [Arabidopsis thaliana]
gi|7486000|pir||T08449 hypothetical protein F22O6.120 -
Arabidopsis thaliana gi|4886277|emb|CAB43423.1| putative
protein [Arabidopsis thaliana]
gi|13430562|gb|AAK25903.1|AF360193_1 unknown protein
[Arabidopsis thaliana] gi|14532764|gb|AAK64083.1|
unknown protein [Arabidopsis thaliana]
gi|15450892|gb|AAK96717.1| Unknown protein [Arabidopsis
thaliana]
Length = 469
Score = 138 bits (348), Expect = 5e-32
Identities = 60/112 (53%), Positives = 87/112 (77%)
Frame = -3
Query: 596 YEKQLSNFSRAKEVEAPSGLGLCFDFSGTETVPIPELMFQFKGGARMMLPLSNYFSLVDD 417
+ Q+SN++R K++E +GLG CF+ SG V +PEL+F+FKGGA++ LPLSNYF+ V +
Sbjct: 356 FASQMSNYTREKDLEKETGLGPCFNISGKGDVTVPELIFEFKGGAKLELPLSNYFTFVGN 415
Query: 416 SEVACLTIISDESSGTARAGGPAIILGNYQQQNFYVEYDLENDRFGFRQQNC 261
++ CLT++SD++ + GPAIILG++QQQN+ VEYDLENDRFGF ++ C
Sbjct: 416 TDTVCLTVVSDKTVNPSGGTGPAIILGSFQQQNYLVEYDLENDRFGFAKKKC 467
>gb|AAL14384.1| AT3g52500/F22O6_120 [Arabidopsis thaliana]
Length = 469
Score = 138 bits (348), Expect = 5e-32
Identities = 60/112 (53%), Positives = 87/112 (77%)
Frame = -3
Query: 596 YEKQLSNFSRAKEVEAPSGLGLCFDFSGTETVPIPELMFQFKGGARMMLPLSNYFSLVDD 417
+ Q+SN++R K++E +GLG CF+ SG V +PEL+F+FKGGA++ LPLSNYF+ V +
Sbjct: 356 FASQMSNYTREKDLEKETGLGPCFNISGKGDVTVPELIFEFKGGAKLELPLSNYFTFVGN 415
Query: 416 SEVACLTIISDESSGTARAGGPAIILGNYQQQNFYVEYDLENDRFGFRQQNC 261
++ CLT++SD++ + GPAIILG++QQQN+ VEYDLENDRFGF ++ C
Sbjct: 416 TDTVCLTVVSDKTVNPSGGTGPAIILGSFQQQNYLVEYDLENDRFGFAKKKC 467
>gb|AAK96597.1| AT3g52500/F22O6_120 [Arabidopsis thaliana]
Length = 110
Score = 135 bits (341), Expect = 4e-31
Identities = 59/108 (54%), Positives = 85/108 (78%)
Frame = -3
Query: 584 LSNFSRAKEVEAPSGLGLCFDFSGTETVPIPELMFQFKGGARMMLPLSNYFSLVDDSEVA 405
+SN++R K++E +GLG CF+ SG V +PEL+F+FKGGA++ LPLSNYF+ V +++
Sbjct: 1 MSNYTREKDLEKETGLGPCFNISGKGDVTVPELIFEFKGGAKLELPLSNYFTFVGNTDTV 60
Query: 404 CLTIISDESSGTARAGGPAIILGNYQQQNFYVEYDLENDRFGFRQQNC 261
CLT++SD++ + GPAIILG++QQQN+ VEYDLENDRFGF ++ C
Sbjct: 61 CLTVVSDKTVNPSGGTGPAIILGSFQQQNYLVEYDLENDRFGFAKKKC 108
>emb|CAD40869.1| OSJNBa0064H22.14 [Oryza sativa (japonica cultivar-group)]
Length = 444
Score = 66.2 bits (160), Expect = 3e-10
Identities = 37/98 (37%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = -3
Query: 542 GLGLCF--DFSGTETVPIPELMFQFKGGARMMLPLSNYFSLVDDSEVACLTIISDESSGT 369
GL LCF G + V +P L+F F GGA + LP NY L S CLT++
Sbjct: 355 GLDLCFRAPAKGVDQVEVPRLVFHFDGGADLDLPAENYMVLDGGSGALCLTVMGSRGLS- 413
Query: 368 ARAGGPAIILGNYQQQNFYVEYDLENDRFGFRQQNCQK 255
I+GN+QQQNF YD+ +D F C K
Sbjct: 414 --------IIGNFQQQNFQFVYDVGHDTLSFAPVQCNK 443
>ref|NP_567506.1| similar to chloroplast nucleoid DNA-binding protein-like; protein
id: At4g16563.1, supported by cDNA: gi_15809799,
supported by cDNA: gi_18377814 [Arabidopsis thaliana]
gi|15809800|gb|AAL06828.1| AT4g16560/dl4305c
[Arabidopsis thaliana] gi|18377815|gb|AAL67094.1|
AT4g16560/dl4305c [Arabidopsis thaliana]
Length = 499
Score = 65.9 bits (159), Expect = 4e-10
Identities = 42/112 (37%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Frame = -3
Query: 569 RAKEVEAPSGLGLCFDFSGTETVPIPELMFQFKGG-ARMMLPLSNYFSLVDDS------- 414
RA VE SG+ C+ + +TV +P L+ F G + + LP NYF D
Sbjct: 383 RADRVEPSSGMSPCYYLN--QTVKVPALVLHFAGNRSSVTLPRRNYFYEFMDGGDGKEEK 440
Query: 413 -EVACLTIISDESSGTARAGGPAIILGNYQQQNFYVEYDLENDRFGFRQQNC 261
++ CL +++ R GG ILGNYQQQ F V YDL N R GF ++ C
Sbjct: 441 RKIGCLMLMNGGDESELR-GGTGAILGNYQQQGFEVVYDLLNRRVGFAKRKC 491
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,403,293
Number of Sequences: 1393205
Number of extensions: 12290218
Number of successful extensions: 35253
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 33715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35143
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
