Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004099A_C01 KMC004099A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC37464.1| malate dehydrogenase 177 6e-44
sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal precursor 177 6e-44
pir||T09263 malate dehydrogenase (EC 1.1.1.37) precursor, glyoxy... 174 6e-43
emb|CAB61751.1| malate dehydrogenase [Cicer arietinum] 172 3e-42
sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal precursor... 164 9e-40
>gb|AAC37464.1| malate dehydrogenase
Length = 350
Score = 177 bits (450), Expect = 6e-44
Identities = 92/100 (92%), Positives = 94/100 (94%)
Frame = -3
Query: 548 VVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFASKVRLGR 369
VVEAKAGAGSATLSMAYAA KFADA L ALRGDAGIIECAYV SQVTELPFFASKVRLGR
Sbjct: 251 VVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVASQVTELPFFASKVRLGR 310
Query: 368 GGVEEILPLGPLNDYERESLEKAKKELATSVEKGVSFIRK 249
GVEEILPLGPLNDYERESLEKAKKELA S+EKG+SFIRK
Sbjct: 311 VGVEEILPLGPLNDYERESLEKAKKELAASIEKGISFIRK 350
>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal precursor
Length = 353
Score = 177 bits (450), Expect = 6e-44
Identities = 92/100 (92%), Positives = 94/100 (94%)
Frame = -3
Query: 548 VVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFASKVRLGR 369
VVEAKAGAGSATLSMAYAA KFADA L ALRGDAGIIECAYV SQVTELPFFASKVRLGR
Sbjct: 254 VVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVASQVTELPFFASKVRLGR 313
Query: 368 GGVEEILPLGPLNDYERESLEKAKKELATSVEKGVSFIRK 249
GVEEILPLGPLNDYERESLEKAKKELA S+EKG+SFIRK
Sbjct: 314 VGVEEILPLGPLNDYERESLEKAKKELAASIEKGISFIRK 353
>pir||T09263 malate dehydrogenase (EC 1.1.1.37) precursor, glyoxysomal - alfalfa
gi|2827078|gb|AAB99754.1| malate dehydrogenase precursor
[Medicago sativa]
Length = 358
Score = 174 bits (441), Expect = 6e-43
Identities = 90/100 (90%), Positives = 94/100 (94%)
Frame = -3
Query: 548 VVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFASKVRLGR 369
VVEAKAGAGSATLSMAYAA KFADA LRAL+G+A II+CAYVDSQVTELPFFASKVRLGR
Sbjct: 259 VVEAKAGAGSATLSMAYAAVKFADACLRALKGEADIIQCAYVDSQVTELPFFASKVRLGR 318
Query: 368 GGVEEILPLGPLNDYERESLEKAKKELATSVEKGVSFIRK 249
GVEE LPLGPL+DYER SLEKAKKELATSVEKGVSFIRK
Sbjct: 319 NGVEEFLPLGPLSDYERASLEKAKKELATSVEKGVSFIRK 358
>emb|CAB61751.1| malate dehydrogenase [Cicer arietinum]
Length = 202
Score = 172 bits (435), Expect = 3e-42
Identities = 88/100 (88%), Positives = 94/100 (94%)
Frame = -3
Query: 548 VVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFASKVRLGR 369
VVEAKAGAGSATLSMAYAA KFADA LRAL+G++GIIECAYV SQVTELPFFASKVRLGR
Sbjct: 103 VVEAKAGAGSATLSMAYAAVKFADACLRALKGESGIIECAYVASQVTELPFFASKVRLGR 162
Query: 368 GGVEEILPLGPLNDYERESLEKAKKELATSVEKGVSFIRK 249
GVEE LPLGPL+DYERESLEKAKKELATSVEKG+SF R+
Sbjct: 163 DGVEEFLPLGPLSDYERESLEKAKKELATSVEKGISFTRQ 202
>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal precursor gi|319832|pir||DEPUGW
malate dehydrogenase (EC 1.1.1.37) precursor,
glyoxysomal - watermelon gi|167284|gb|AAA33041.1|
glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37)
Length = 356
Score = 164 bits (414), Expect = 9e-40
Identities = 83/99 (83%), Positives = 89/99 (89%)
Frame = -3
Query: 548 VVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFASKVRLGR 369
VVEAKAGAGSATLSMAYAA KFADA LR LRGDAG+IECA+V SQVTELPFFASKVRLGR
Sbjct: 257 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGR 316
Query: 368 GGVEEILPLGPLNDYERESLEKAKKELATSVEKGVSFIR 252
G+EE+ LGPLN+YER LEKAKKELA S+EKGVSFIR
Sbjct: 317 NGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,554,799
Number of Sequences: 1393205
Number of extensions: 10373897
Number of successful extensions: 31819
Number of sequences better than 10.0: 231
Number of HSP's better than 10.0 without gapping: 30566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31751
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
