Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004098A_C01 KMC004098A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188642.2| hypothetical protein; protein id: At3g20070.1, ... 86 2e-16
gb|AAK15504.1|AF325722_1 unknown [Pennisetum ciliare] 65 5e-10
sp|O76011|K1M4_HUMAN Keratin, type I cuticular HA4 (Hair keratin... 33 2.2
ref|NP_066293.2| type I hair keratin 4; hard keratin, type I, 4... 33 2.2
gb|AAH41070.1| similar to keratin, hair, acidic, 4 [Homo sapiens] 33 2.2
>ref|NP_188642.2| hypothetical protein; protein id: At3g20070.1, supported by cDNA:
gi_17380795 [Arabidopsis thaliana]
gi|9293961|dbj|BAB01864.1| gene_id:MAL21.7~unknown
protein [Arabidopsis thaliana]
gi|17380796|gb|AAL36085.1| unknown protein [Arabidopsis
thaliana] gi|21689809|gb|AAM67548.1| unknown protein
[Arabidopsis thaliana]
Length = 282
Score = 86.3 bits (212), Expect = 2e-16
Identities = 42/62 (67%), Positives = 49/62 (78%)
Frame = -3
Query: 483 SSGYSFSLSWIGKASGEEVELLYHVLSLGTFERVAPEWMREDIMFSPTMCPTFFERVSHV 304
++G SFSL++I +GEE ELLY SLGTF+RVAPEWMRE I FS +MCP FFERVS V
Sbjct: 218 TTGLSFSLTFINNPNGEESELLYKPASLGTFQRVAPEWMREVIKFSTSMCPIFFERVSRV 277
Query: 303 IK 298
IK
Sbjct: 278 IK 279
>gb|AAK15504.1|AF325722_1 unknown [Pennisetum ciliare]
Length = 130
Score = 64.7 bits (156), Expect = 5e-10
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = -3
Query: 483 SSGYSFSLSWIGKASGEEVELLYHVLSLGTFERVAPEWMREDIMFSPTMCPTFFERVSHV 304
+SGYSF L+W+ E Y + SLGT ER+A +WM++DI FS MC FFER+S++
Sbjct: 71 ASGYSFKLTWLENPG----EWSYKLSSLGTLERIAVDWMKQDITFSMNMCRVFFERISNI 126
Query: 303 I 301
I
Sbjct: 127 I 127
>sp|O76011|K1M4_HUMAN Keratin, type I cuticular HA4 (Hair keratin, type I HA4)
gi|3724105|emb|CAA76386.1| type I hair keratin 4 [Homo
sapiens]
Length = 394
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 362 KTSCSAQPCAPPSSKGYLMLSSQVEPLRFCFCCFEFYWCPPSF 234
+TSCS++PC PPS GY + + P C ++C SF
Sbjct: 13 RTSCSSRPCVPPSCHGYTLPGACNIPANVSNC---NWFCEGSF 52
>ref|NP_066293.2| type I hair keratin 4; hard keratin, type I, 4 [Homo sapiens]
Length = 436
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 362 KTSCSAQPCAPPSSKGYLMLSSQVEPLRFCFCCFEFYWCPPSF 234
+TSCS++PC PPS GY + + P C ++C SF
Sbjct: 55 RTSCSSRPCVPPSCHGYTLPGACNIPANVSNC---NWFCEGSF 94
>gb|AAH41070.1| similar to keratin, hair, acidic, 4 [Homo sapiens]
Length = 436
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 362 KTSCSAQPCAPPSSKGYLMLSSQVEPLRFCFCCFEFYWCPPSF 234
+TSCS++PC PPS GY + + P C ++C SF
Sbjct: 55 RTSCSSRPCVPPSCHGYTLPGACNIPANVSNC---NWFCEGSF 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,549,650
Number of Sequences: 1393205
Number of extensions: 7036909
Number of successful extensions: 17350
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17345
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
