Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004091A_C01 KMC004091A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195692.1| hypothetical protein; protein id: At4g39820.1 [... 192 3e-48
gb|AAO22661.1| unknown protein [Arabidopsis thaliana] 192 3e-48
dbj|BAC33585.1| unnamed protein product [Mus musculus] 62 8e-09
gb|AAH30887.1| Unknown (protein for MGC:31472) [Mus musculus] gi... 62 8e-09
ref|XP_126889.1| similar to CGI-87 protein [Homo sapiens] [Mus m... 62 8e-09
>ref|NP_195692.1| hypothetical protein; protein id: At4g39820.1 [Arabidopsis
thaliana] gi|7487217|pir||T05019 hypothetical protein
T19P19.210 - Arabidopsis thaliana
gi|3080451|emb|CAA18768.1| hypothetical protein
[Arabidopsis thaliana] gi|7270966|emb|CAB80645.1|
hypothetical protein [Arabidopsis thaliana]
Length = 427
Score = 192 bits (489), Expect = 3e-48
Identities = 89/119 (74%), Positives = 111/119 (92%)
Frame = -3
Query: 691 KVEYQNLVNRNKALVYMVGKDYVSPVREYEECIERDSTDVVAVTNKALSLMYLRDLSDSI 512
++++ NLV RNKALVY+V KDYVS VREY++CIERD++D++AV NKAL LMYLRDLSD+I
Sbjct: 308 EIQFNNLVGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAI 367
Query: 511 KVLENALERVPTVALNKTIVVNLCSMYELAYVNPSDIKRTLSSWIARVAPDDFDSTCTR 335
KV+E+ALERVPT ALN+++VVNLCSMYELAYVN +D+KRTL++WIARVAPDDFDS+CTR
Sbjct: 368 KVMESALERVPTAALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTR 426
>gb|AAO22661.1| unknown protein [Arabidopsis thaliana]
Length = 412
Score = 192 bits (489), Expect = 3e-48
Identities = 89/119 (74%), Positives = 111/119 (92%)
Frame = -3
Query: 691 KVEYQNLVNRNKALVYMVGKDYVSPVREYEECIERDSTDVVAVTNKALSLMYLRDLSDSI 512
++++ NLV RNKALVY+V KDYVS VREY++CIERD++D++AV NKAL LMYLRDLSD+I
Sbjct: 293 EIQFNNLVGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAI 352
Query: 511 KVLENALERVPTVALNKTIVVNLCSMYELAYVNPSDIKRTLSSWIARVAPDDFDSTCTR 335
KV+E+ALERVPT ALN+++VVNLCSMYELAYVN +D+KRTL++WIARVAPDDFDS+CTR
Sbjct: 353 KVMESALERVPTAALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTR 411
>dbj|BAC33585.1| unnamed protein product [Mus musculus]
Length = 569
Score = 62.0 bits (149), Expect = 8e-09
Identities = 33/113 (29%), Positives = 62/113 (54%)
Frame = -3
Query: 673 LVNRNKALVYMVGKDYVSPVREYEECIERDSTDVVAVTNKALSLMYLRDLSDSIKVLENA 494
+V N+A +Y+ ++ + + E + D T+ VA N A+ L+YL L DS++ LE
Sbjct: 455 MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAM 514
Query: 493 LERVPTVALNKTIVVNLCSMYELAYVNPSDIKRTLSSWIARVAPDDFDSTCTR 335
+++ P L+++++ NL +MYEL K++L +A D F++ C +
Sbjct: 515 VQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLK 567
>gb|AAH30887.1| Unknown (protein for MGC:31472) [Mus musculus]
gi|23958411|gb|AAH24077.1| Similar to CGI-87 protein [Mus
musculus]
Length = 797
Score = 62.0 bits (149), Expect = 8e-09
Identities = 33/113 (29%), Positives = 62/113 (54%)
Frame = -3
Query: 673 LVNRNKALVYMVGKDYVSPVREYEECIERDSTDVVAVTNKALSLMYLRDLSDSIKVLENA 494
+V N+A +Y+ ++ + + E + D T+ VA N A+ L+YL L DS++ LE
Sbjct: 683 MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAM 742
Query: 493 LERVPTVALNKTIVVNLCSMYELAYVNPSDIKRTLSSWIARVAPDDFDSTCTR 335
+++ P L+++++ NL +MYEL K++L +A D F++ C +
Sbjct: 743 VQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLK 795
>ref|XP_126889.1| similar to CGI-87 protein [Homo sapiens] [Mus musculus]
Length = 797
Score = 62.0 bits (149), Expect = 8e-09
Identities = 33/113 (29%), Positives = 62/113 (54%)
Frame = -3
Query: 673 LVNRNKALVYMVGKDYVSPVREYEECIERDSTDVVAVTNKALSLMYLRDLSDSIKVLENA 494
+V N+A +Y+ ++ + + E + D T+ VA N A+ L+YL L DS++ LE
Sbjct: 683 MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLEAM 742
Query: 493 LERVPTVALNKTIVVNLCSMYELAYVNPSDIKRTLSSWIARVAPDDFDSTCTR 335
+++ P L+++++ NL +MYEL K++L +A D F++ C +
Sbjct: 743 VQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLK 795
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,149,590
Number of Sequences: 1393205
Number of extensions: 12055612
Number of successful extensions: 41721
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 38521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41455
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
