Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004089A_C01 KMC004089A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_715068.1| Flagellar biosynthesis pathway, component FlhA ... 32 4.5
gb|AAM88672.1|AF409098_1 transcription factor even-skipped [Helo... 32 5.9
ref|ZP_00120287.1| hypothetical protein [Bifidobacterium longum ... 32 7.7
gb|EAA20770.1| hypothetical protein [Plasmodium yoelii yoelii] 31 10.0
>ref|NP_715068.1| Flagellar biosynthesis pathway, component FlhA [Wigglesworthia
brevipalpis] gi|25165990|dbj|BAC24181.1| flhA
[Wigglesworthia brevipalpis]
Length = 728
Score = 32.3 bits (72), Expect = 4.5
Identities = 19/71 (26%), Positives = 37/71 (51%)
Frame = -3
Query: 435 FRVYIYLLAGWELSANTANNEIDNLCDCVGHSHY*VFGGPL*KFLVLSII*LHVSTYILM 256
F++ + L N N ++ L + +G++ Y + GP+ FL+LS++ L + +IL
Sbjct: 5 FQIILIKEKNGTLLMNQNNKILNTLENILGNTKYKILAGPIIIFLILSMMILPLPPFILD 64
Query: 255 YFSAANLRYLI 223
A N+ + I
Sbjct: 65 LLFAFNISFSI 75
>gb|AAM88672.1|AF409098_1 transcription factor even-skipped [Helobdella robusta]
Length = 761
Score = 32.0 bits (71), Expect = 5.9
Identities = 23/97 (23%), Positives = 47/97 (47%), Gaps = 8/97 (8%)
Frame = +3
Query: 156 KISEKLTNYILA------NARSRNLPQNKLNNEGLQH*NTSRYRWRRGVKLWTELRTFKE 317
K EKLTNY+L+ ++ ++ Q ++ + LQH Y+ ++ + L +L+ +
Sbjct: 492 KNEEKLTNYLLSRFNLNQHSHHSHIHQRQMYLKQLQH---QHYQQQQQIMLQQQLQHHRR 548
Query: 318 APQKLSNDYVQHN--HIDYLSHCLQY*QKAPSQQVNR 422
Q L + + ++ +LSHCL ++ N+
Sbjct: 549 HQQYLKQSILSESTLNLPHLSHCLPSNDHTTTEDFNK 585
>ref|ZP_00120287.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 740
Score = 31.6 bits (70), Expect = 7.7
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 2/62 (3%)
Frame = -1
Query: 554 MISG*SVHNLVNDDSGREQNL--LPCSMQLTLVGDLEKDFQCSEFISIYLLAGSFLLILQ 381
++S ++ L NDD+GREQ L P SM LTL+ + S Y+LA FLL +
Sbjct: 442 LMSAYDLYALSNDDAGREQLLKDYPESMALTLMNAANMIHE-GRLRSAYMLAQGFLLSSR 500
Query: 380 TM 375
M
Sbjct: 501 DM 502
>gb|EAA20770.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 4099
Score = 31.2 bits (69), Expect = 10.0
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 153 TKISEKLTNYILANARSRNLPQNKLNNEGLQH*NTSRYRWRRGVKLWTELRTFKEAPQKL 332
TKI + NY++ N NL +K N+E L N + Y++ ++ + KE+ K
Sbjct: 3845 TKIKNMIRNYLINNIHYTNLYNSKTNDEFLNLINKTNYKYTHISNTSIQI-SEKESLLKD 3903
Query: 333 SNDYVQHNH 359
+N+ + H +
Sbjct: 3904 NNNLLDHTY 3912
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,087,859
Number of Sequences: 1393205
Number of extensions: 8882890
Number of successful extensions: 19159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19002
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
