Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004088A_C01 KMC004088A_c01
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565058.1| expressed protein; protein id: At1g73180.1, sup... 234 4e-61
gb|AAM61003.1| unknown [Arabidopsis thaliana] 232 2e-60
gb|AAH44026.1| Similar to hypothetical protein D030048D22 [Xenop... 86 5e-16
ref|XP_130881.1| similar to CDA02 protein [Homo sapiens] [Mus mu... 86 8e-16
dbj|BAC37320.1| unnamed protein product [Mus musculus] 86 8e-16
>ref|NP_565058.1| expressed protein; protein id: At1g73180.1, supported by cDNA:
108165., supported by cDNA: gi_15810526, supported by
cDNA: gi_20259060 [Arabidopsis thaliana]
gi|25353089|pir||G96757 probable protein ATPase
T18K17.15 [imported] - Arabidopsis thaliana
gi|12324325|gb|AAG52134.1|AC010556_16 unknown protein;
49372-46275 [Arabidopsis thaliana]
gi|15810527|gb|AAL07151.1| unknown protein [Arabidopsis
thaliana] gi|20259061|gb|AAM14246.1| unknown protein
[Arabidopsis thaliana]
Length = 513
Score = 234 bits (598), Expect(2) = 4e-61
Identities = 112/176 (63%), Positives = 141/176 (79%)
Frame = -2
Query: 765 LTGDMVFWDYADKKQLAATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSL 586
L GDM FWD +KKQL + KAEWSVTSEWSPDG YF+TA+TAPR Q+DNG+KIF+Y+G
Sbjct: 336 LPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMKIFNYDGKR 395
Query: 585 YFKKMFDKLFQADWKPESPSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQAATKASSAN 406
Y+KKMF++L+QA+WKPESP +FGDI+ELIKS++S+KL + K GQG A K + N
Sbjct: 396 YYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQG----SAQKKTIAPN 451
Query: 405 PPAQKPAAYRPPHAKTAAVIQAQLLGESPSETLSKNALRNQKKREKKKAATDASSS 238
P AQKPAAYRPPHAK AA +QA+LLG S + +SKNAL+N+KKRE KKAA A+++
Sbjct: 452 PIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNALKNKKKRENKKAAAAAAAA 507
Score = 23.1 bits (48), Expect(2) = 4e-61
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 797 GPPLCLAGFGNL 762
G LC+AGFGNL
Sbjct: 325 GRVLCVAGFGNL 336
>gb|AAM61003.1| unknown [Arabidopsis thaliana]
Length = 512
Score = 232 bits (591), Expect(2) = 2e-60
Identities = 111/176 (63%), Positives = 140/176 (79%)
Frame = -2
Query: 765 LTGDMVFWDYADKKQLAATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSL 586
L GDM FWD +KKQL + KAEWSVTSEWSPDG YF+TA+TAPR Q+DNG+KIF+Y+G
Sbjct: 335 LPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMKIFNYDGKR 394
Query: 585 YFKKMFDKLFQADWKPESPSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQAATKASSAN 406
Y+KKMF++L+QA+WKPESP +FGDI+ELIKS++S+KL + K GQG A K + N
Sbjct: 395 YYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQG----SAQKKTIAPN 450
Query: 405 PPAQKPAAYRPPHAKTAAVIQAQLLGESPSETLSKNALRNQKKREKKKAATDASSS 238
P AQKPAAYRPPHAK AA +QA+L G S + +SKNAL+N+KKRE KKAA A+++
Sbjct: 451 PIAQKPAAYRPPHAKHAAAVQAELPGISTTGEMSKNALKNKKKRENKKAAAAAAAA 506
Score = 23.1 bits (48), Expect(2) = 2e-60
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 797 GPPLCLAGFGNL 762
G LC+AGFGNL
Sbjct: 324 GRVLCVAGFGNL 335
>gb|AAH44026.1| Similar to hypothetical protein D030048D22 [Xenopus laevis]
Length = 594
Score = 86.3 bits (212), Expect = 5e-16
Identities = 59/179 (32%), Positives = 85/179 (46%), Gaps = 5/179 (2%)
Frame = -2
Query: 765 LTGDMVFWDYADKKQLAATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSL 586
L G M WD K ++ A + W P+G + +TAT +PRL+V NG KI+HY G+L
Sbjct: 351 LRGQMEVWDVKKYKLISKPTASDATFFSWCPNGEHIITATCSPRLRVGNGYKIWHYTGTL 410
Query: 585 YFK---KMFDKLFQADWKPESPSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQAATKAS 415
K +L+Q W+P F A + +++ G PTQ + A
Sbjct: 411 LHKYDVPANSELWQVSWQPFPDGVFPAKAIVYQAV------------PGDLPTQESKPAE 458
Query: 414 SANPPA--QKPAAYRPPHAKTAAVIQAQLLGESPSETLSKNALRNQKKREKKKAATDAS 244
+ PPA KP + H ++ +S + +SK AL+NQKKRE KKAA S
Sbjct: 459 AYRPPALRNKPVSSYKLHEDEP---PQSMMPQSTEKPMSKTALKNQKKREAKKAAKQES 514
>ref|XP_130881.1| similar to CDA02 protein [Homo sapiens] [Mus musculus]
Length = 581
Score = 85.5 bits (210), Expect = 8e-16
Identities = 65/189 (34%), Positives = 87/189 (45%), Gaps = 13/189 (6%)
Frame = -2
Query: 765 LTGDMVFWDYADKKQLAATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSL 586
L G M WD + K ++ A S W PDG + +TAT APRL+V+NG KI+HY GSL
Sbjct: 337 LRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSL 396
Query: 585 YFK---KMFDKLFQADWKPESPSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQAATKAS 415
K +L+Q W+P F D K+I + + PS + PK
Sbjct: 397 LHKYDVPSNGELWQVSWQP-----FLDGIFPAKTIKYQAVPSEVPS-EEPKVA------- 443
Query: 414 SANPPAQKPAAYRPPHAKTAAVIQAQLLGESPSET----------LSKNALRNQKKREKK 265
AYRPP + V ++L E P + LSK AL+NQ+K E K
Sbjct: 444 ---------TAYRPPALRNKPVTNSKLHEEEPPQNMKPHPGSDKPLSKTALKNQRKHEAK 494
Query: 264 KAATDASSS 238
KAA + S
Sbjct: 495 KAAKQEARS 503
>dbj|BAC37320.1| unnamed protein product [Mus musculus]
Length = 586
Score = 85.5 bits (210), Expect = 8e-16
Identities = 65/189 (34%), Positives = 87/189 (45%), Gaps = 13/189 (6%)
Frame = -2
Query: 765 LTGDMVFWDYADKKQLAATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSL 586
L G M WD + K ++ A S W PDG + +TAT APRL+V+NG KI+HY GSL
Sbjct: 342 LRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSL 401
Query: 585 YFK---KMFDKLFQADWKPESPSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQAATKAS 415
K +L+Q W+P F D K+I + + PS + PK
Sbjct: 402 LHKYDVPSNGELWQVSWQP-----FLDGIFPAKTIKYQAVPSEVPS-EEPKVA------- 448
Query: 414 SANPPAQKPAAYRPPHAKTAAVIQAQLLGESPSET----------LSKNALRNQKKREKK 265
AYRPP + V ++L E P + LSK AL+NQ+K E K
Sbjct: 449 ---------TAYRPPALRNKPVTNSKLHEEEPPQNMKPHPGSDKPLSKTALKNQRKHEAK 499
Query: 264 KAATDASSS 238
KAA + S
Sbjct: 500 KAAKQEARS 508
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,977,624
Number of Sequences: 1393205
Number of extensions: 15799073
Number of successful extensions: 61649
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 53822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60873
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
