Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004086A_C01 KMC004086A_c01
(1042 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181639.1| RRM-containing RNA-binding protein; protein id:... 236 3e-61
gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba] 236 3e-61
gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|201483... 233 5e-60
ref|NP_567042.1| RRM-containing RNA-binding protein; protein id:... 233 5e-60
dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica ... 227 3e-58
>ref|NP_181639.1| RRM-containing RNA-binding protein; protein id: At2g41060.1,
supported by cDNA: gi_16612301 [Arabidopsis thaliana]
gi|7487621|pir||T02113 probable RNA-binding protein
At2g41060 [imported] - Arabidopsis thaliana
gi|3402711|gb|AAD12005.1| putative RNA-binding protein
[Arabidopsis thaliana]
gi|16612302|gb|AAL27512.1|AF439844_1 At2g41060/T3K9.17
[Arabidopsis thaliana] gi|22137136|gb|AAM91413.1|
At2g41060/T3K9.17 [Arabidopsis thaliana]
Length = 451
Score = 236 bits (603), Expect = 3e-61
Identities = 150/297 (50%), Positives = 178/297 (59%), Gaps = 15/297 (5%)
Frame = -3
Query: 1034 LFKHRDGCRRALKNPQKKIGNRTTSSQLASAGPVPATPPNAPPVS---EYTQRKIFVSNV 864
LFK R G R ALK PQKKIG R T+ QLAS GPV P AP E QRKI+VSNV
Sbjct: 175 LFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNV 234
Query: 863 SSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALEEPNKEYEG 684
S+DI+P KLLEFF +FGE+E+GPLGLDK TGRPKGFALFVYRS+ESAKKALEEP+K +EG
Sbjct: 235 SADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEG 294
Query: 683 HTLYCQKAVDGPKGSKGYHQNQHQHQHQHHSHHHQPHYQPHKKHKYNSGGGPSHGGGGHL 504
H L+C KA DGPK K QHQH H+SH+ YQ + + Y G P GG GH
Sbjct: 295 HVLHCHKANDGPKQVK-------QHQHNHNSHNQNSRYQRNDNNGY---GAP--GGHGHF 342
Query: 503 MAPSNPGMGGYNPGVQGQGLNPALGQAL-ALLANQGAGLGLGN-----LLGTF-SGAPVN 345
+A +N + Q NPA+GQAL ALLA+QGAGLGL LLGT + +P
Sbjct: 343 IAGNNQAV---------QAFNPAIGQALTALLASQGAGLGLNQAFGQALLGTLGTASPGA 393
Query: 344 QAGPPACCSLW*S---GSHELWEPARDATGIPRIPQMGQNSGVRPHPGS--GAPYMG 189
G P+ + G + + G + Q GQ R G+ G PYMG
Sbjct: 394 VGGMPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGAGRGQHGAGYGGPYMG 450
Score = 61.2 bits (147), Expect = 3e-08
Identities = 30/84 (35%), Positives = 48/84 (56%)
Frame = -3
Query: 899 EYTQRKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAK 720
+ RKIFV + D + L++ FKQ+GE+ED +DK +G+ KG+ +++S A+
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 719 KALEEPNKEYEGHTLYCQKAVDGP 648
AL++P K+ CQ A GP
Sbjct: 184 NALKQPQKKIGTRMTACQLASIGP 207
>gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba]
Length = 515
Score = 236 bits (603), Expect = 3e-61
Identities = 147/319 (46%), Positives = 184/319 (57%), Gaps = 36/319 (11%)
Frame = -3
Query: 1034 LFKHRDGCRRALKNPQKKIGNRTTSSQLASAGPVPATPPNA----PPVSEYTQRKIFVSN 867
LFK R G R ALK PQKKIGNR T+ QLAS GPV TP A P SEYTQRKI++SN
Sbjct: 198 LFKKRSGARNALKEPQKKIGNRMTACQLASIGPVAQTPQPAVQLVQPGSEYTQRKIYISN 257
Query: 866 VSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALEEPNKEYE 687
V +++P KL +F +FGE+E+GPLGLDK TG+PKGF LFVY+S ESA+++LEEP+KE+E
Sbjct: 258 VGPELDPHKLFAYFSRFGEIEEGPLGLDKATGKPKGFCLFVYKSAESARRSLEEPHKEFE 317
Query: 686 GHTLYCQKAVDGPKGSKGYHQNQHQHQH-----------QHHSHHHQPHYQPHKKHKYNS 540
GH L+CQ+A+DGPK K H Q QH Q + + +Q + Y
Sbjct: 318 GHILHCQRAIDGPKAGKTQHPQPQQLQHVNSLNQFNQLNQLNPATQRTQFQRNDNVGYVG 377
Query: 539 GGGPSHGGGGHLMAPSNPGMGGYNPGV--QGQGLN----PALGQAL-ALLANQGAGLGLG 381
G + GHLMAP+ P + GYN QGLN PALGQAL ALLA+QGA LGL
Sbjct: 378 GSSVAVSQPGHLMAPAGPTI-GYNQAAASAAQGLNPVLTPALGQALTALLASQGATLGLS 436
Query: 380 NLLGTF-SGAPVNQAGPPACCSLW*SGSHELWEPARDATG-----IPRI--------PQM 243
+LLG+ + +N G PA SG + G +P++ Q+
Sbjct: 437 DLLGSLGTSNALNHGGVPAAGHGVQSGYSAQPTISPSVMGAYGNSVPQVGLQVQYPNQQI 496
Query: 242 GQNSGVRPHPGSGAPYMGH 186
GQ R G A YMGH
Sbjct: 497 GQGGSGRGQYGGAASYMGH 515
Score = 60.1 bits (144), Expect = 6e-08
Identities = 38/132 (28%), Positives = 56/132 (41%), Gaps = 6/132 (4%)
Frame = -3
Query: 893 TQRKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKA 714
+ RKIFV + D L+ F Q+GE+ED DK +G+ KG+ +++ A+ A
Sbjct: 149 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKASGKSKGYGFILFKKRSGARNA 208
Query: 713 LEEPNKEYEGHTLYCQKAVDGPKGS------KGYHQNQHQHQHQHHSHHHQPHYQPHKKH 552
L+EP K+ CQ A GP + Q + + + P PHK
Sbjct: 209 LKEPQKKIGNRMTACQLASIGPVAQTPQPAVQLVQPGSEYTQRKIYISNVGPELDPHKLF 268
Query: 551 KYNSGGGPSHGG 516
Y S G G
Sbjct: 269 AYFSRFGEIEEG 280
>gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|20148397|gb|AAM10089.1|
putative protein [Arabidopsis thaliana]
Length = 478
Score = 233 bits (593), Expect = 5e-60
Identities = 150/307 (48%), Positives = 183/307 (58%), Gaps = 24/307 (7%)
Frame = -3
Query: 1034 LFKHRDGCRRALKNPQKKIGNRTTSSQLASAGPVPATPPNAPPV---------SEYTQRK 882
L+K R G R ALK PQKKIG+R T+ QLAS GPV P A SE+TQ+K
Sbjct: 187 LYKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKK 246
Query: 881 IFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALEEP 702
I+VSNV ++++P KLL FF +FGE+E+GPLGLDK TGRPKGF LFVY+S ESAK+ALEEP
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 701 NKEYEGHTLYCQKAVDGPKGSKGYHQNQHQHQHQHHSHHHQPHYQPHKKHKYNSGGGPSH 522
+K +EGH L+CQKA+DGPK K Q QH H H++++ P YQ + N+G GP
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGK-----QQQHHHNPHAYNN-PRYQRND----NNGYGPP- 355
Query: 521 GGGGHLMAPSNPGMGGYNPGVQGQGLNPALGQAL-ALLANQGAGL--------GLGNLLG 369
GG GHLMA + GMG G Q +NPA+GQAL ALLA+QGAGL L LG
Sbjct: 356 GGHGHLMAGNPAGMG----GPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLG 411
Query: 368 TFSGA-PVNQAGPPA--CCSLW*SGSHELWEPARDATGIPRIPQMGQNSGVRPHPG---S 207
T +G P N G P G+ + G + PQ GQ R G
Sbjct: 412 TAAGVNPGNGVGMPTGYGTQAMAPGTMPGYGTQPGLQGGYQTPQPGQGGTSRGQHGVGPY 471
Query: 206 GAPYMGH 186
G PYMGH
Sbjct: 472 GTPYMGH 478
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = -3
Query: 887 RKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALE 708
RKIFV + D + L+E FKQ+GE+ED DK +G+ KG+ +Y+S A+ AL+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 707 EPNKEYEGHTLYCQKAVDGP 648
+P K+ CQ A GP
Sbjct: 200 QPQKKIGSRMTACQLASKGP 219
>ref|NP_567042.1| RRM-containing RNA-binding protein; protein id: At3g56860.1,
supported by cDNA: gi_14194148, supported by cDNA:
gi_14335131, supported by cDNA: gi_14596194, supported by
cDNA: gi_20148396, supported by cDNA: gi_20259481
[Arabidopsis thaliana] gi|11358431|pir||T51274
hypothetical protein T8M16_190 - Arabidopsis thaliana
gi|9663005|emb|CAC00749.1| putative protein [Arabidopsis
thaliana] gi|14194149|gb|AAK56269.1|AF367280_1
AT3g56860/T8M16_190 [Arabidopsis thaliana]
gi|14335132|gb|AAK59846.1| AT3g56860/T8M16_190
[Arabidopsis thaliana] gi|19682816|emb|CAD28672.1| UBP1
interacting protein 2a [Arabidopsis thaliana]
gi|20259482|gb|AAM13861.1| unknown protein [Arabidopsis
thaliana] gi|21436451|gb|AAM51426.1| unknown protein
[Arabidopsis thaliana] gi|22137068|gb|AAM91379.1|
At3g56860/T8M16_190 [Arabidopsis thaliana]
Length = 478
Score = 233 bits (593), Expect = 5e-60
Identities = 150/307 (48%), Positives = 183/307 (58%), Gaps = 24/307 (7%)
Frame = -3
Query: 1034 LFKHRDGCRRALKNPQKKIGNRTTSSQLASAGPVPATPPNAPPV---------SEYTQRK 882
L+K R G R ALK PQKKIG+R T+ QLAS GPV P A SE+TQ+K
Sbjct: 187 LYKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKK 246
Query: 881 IFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALEEP 702
I+VSNV ++++P KLL FF +FGE+E+GPLGLDK TGRPKGF LFVY+S ESAK+ALEEP
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 701 NKEYEGHTLYCQKAVDGPKGSKGYHQNQHQHQHQHHSHHHQPHYQPHKKHKYNSGGGPSH 522
+K +EGH L+CQKA+DGPK K Q QH H H++++ P YQ + N+G GP
Sbjct: 307 HKTFEGHILHCQKAIDGPKPGK-----QQQHHHNPHAYNN-PRYQRND----NNGYGPP- 355
Query: 521 GGGGHLMAPSNPGMGGYNPGVQGQGLNPALGQAL-ALLANQGAGL--------GLGNLLG 369
GG GHLMA + GMG G Q +NPA+GQAL ALLA+QGAGL L LG
Sbjct: 356 GGHGHLMAGNPAGMG----GPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLG 411
Query: 368 TFSGA-PVNQAGPPA--CCSLW*SGSHELWEPARDATGIPRIPQMGQNSGVRPHPG---S 207
T +G P N G P G+ + G + PQ GQ R G
Sbjct: 412 TAAGVNPGNGVGMPTGYGTQAMAPGTMPGYGTQPGLQGGYQTPQPGQGGTSRGQHGVGPY 471
Query: 206 GAPYMGH 186
G PYMGH
Sbjct: 472 GTPYMGH 478
Score = 65.1 bits (157), Expect = 2e-09
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = -3
Query: 887 RKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALE 708
RKIFV + D + L+E FKQ+GE+ED DK +G+ KG+ +Y+S A+ AL+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 707 EPNKEYEGHTLYCQKAVDGP 648
+P K+ CQ A GP
Sbjct: 200 QPQKKIGSRMTACQLASKGP 219
>dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 490
Score = 227 bits (578), Expect = 3e-58
Identities = 148/312 (47%), Positives = 178/312 (56%), Gaps = 29/312 (9%)
Frame = -3
Query: 1034 LFKHRDGCRRALKNPQKKIGNRTTSSQLASAGPVP----ATPPNA-----------PPVS 900
LF R G R AL+ PQKKIGNRTT+ QLAS GPVP AT P PPVS
Sbjct: 203 LFSRRSGARAALREPQKKIGNRTTACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVS 262
Query: 899 EYTQRKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAK 720
EYTQRKIFVSNV +DI+P KLL+FF ++GE+E+GPLGLDK TG+PKGFALFVY++++SAK
Sbjct: 263 EYTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAK 322
Query: 719 KALEEPNKEYEGHTLYCQKAVDGPKGSKGYHQNQHQHQHQHHSHHHQPHYQPHKKHKYNS 540
KAL+EP+K++EG L+CQKA+DGPK +KG Y H S
Sbjct: 323 KALQEPHKQFEGVVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGAH------S 376
Query: 539 GGGPSHGGGGHLMAPSNPGMGGYNPGVQ-GQGLNPALGQAL-ALLANQGAGLGLGNLLG- 369
P GGH+M PS PGV G G+NPALGQAL A+LA+QG GLGL N+LG
Sbjct: 377 HSLPGAAVGGHVM-PSPVSSLTSLPGVAGGPGVNPALGQALTAILASQGGGLGLNNILGV 435
Query: 368 --TFSGAPVNQAGPPACCSLW*SGSHELWEPARDATGIPRIPQM---------GQNSGVR 222
SG P P A L ++G+P +P G G
Sbjct: 436 GANGSGLP----NPGASAGL-------------GSSGLPGMPGAGGYLGGYGGGGGYGST 478
Query: 221 PHPGSGAPYMGH 186
P G G YMGH
Sbjct: 479 PPGGPGRNYMGH 490
Score = 56.2 bits (134), Expect = 8e-07
Identities = 32/89 (35%), Positives = 43/89 (47%)
Frame = -3
Query: 887 RKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALE 708
RKIFV + D L E F +GE+ED + D+ TG+ KG+ ++ A+ AL
Sbjct: 156 RKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGARAALR 215
Query: 707 EPNKEYEGHTLYCQKAVDGPKGSKGYHQN 621
EP K+ T CQ A GP G N
Sbjct: 216 EPQKKIGNRTTACQLASVGPVPPGGMATN 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,050,404,319
Number of Sequences: 1393205
Number of extensions: 28862891
Number of successful extensions: 215955
Number of sequences better than 10.0: 3022
Number of HSP's better than 10.0 without gapping: 110146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179063
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61256865594
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
