Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004084A_C02 KMC004084A_c02
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10488 pectinesterase (EC 3.1.1.11) PECS1.2 - sweet orange ... 190 2e-47
gb|AAB57670.1| pectinesterase [Citrus sinensis] 189 4e-47
sp|O04886|PME1_CITSI Pectinesterase 1.1 precursor (Pectin methyl... 189 4e-47
emb|CAC01624.1| putative pectin methylesterase [Populus tremula ... 185 4e-46
emb|CAB95025.1| pectin methylesterase [Nicotiana tabacum] 184 9e-46
>pir||T10488 pectinesterase (EC 3.1.1.11) PECS1.2 - sweet orange (fragment)
gi|2098707|gb|AAB57668.1| pectinesterase [Citrus
sinensis]
Length = 290
Score = 190 bits (482), Expect = 2e-47
Identities = 89/107 (83%), Positives = 96/107 (89%)
Frame = -2
Query: 668 EPVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQNPGPG 489
+PV+ SFPTYLGRPWKEYSRTV MQSSI+DVI PAGWHEW GNFALNTL Y E+QN G G
Sbjct: 184 KPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAG 243
Query: 488 AGTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 348
AGTS RV WKG +VITSA+EAQAFTPGSFIAGS+WLGSTGFPFSLGL
Sbjct: 244 AGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 290
>gb|AAB57670.1| pectinesterase [Citrus sinensis]
Length = 584
Score = 189 bits (479), Expect = 4e-47
Identities = 88/107 (82%), Positives = 96/107 (89%)
Frame = -2
Query: 668 EPVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQNPGPG 489
+PV+ SFPTYLGRPWKEYSRTV MQSSI+D+I PAGWHEW GNFALNTL Y E+QN G G
Sbjct: 478 KPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAG 537
Query: 488 AGTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 348
AGTS RV WKG +VITSA+EAQAFTPGSFIAGS+WLGSTGFPFSLGL
Sbjct: 538 AGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584
>sp|O04886|PME1_CITSI Pectinesterase 1.1 precursor (Pectin methylesterase) (PE)
gi|7447383|pir||T10485 pectinesterase (EC 3.1.1.11)
PECS1.1 - sweet orange gi|2098705|gb|AAB57667.1|
pectinesterase [Citrus sinensis]
Length = 584
Score = 189 bits (479), Expect = 4e-47
Identities = 88/107 (82%), Positives = 96/107 (89%)
Frame = -2
Query: 668 EPVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQNPGPG 489
+PV+ SFPTYLGRPWKEYSRTV MQSSI+D+I PAGWHEW GNFALNTL Y E+QN G G
Sbjct: 478 KPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAG 537
Query: 488 AGTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 348
AGTS RV WKG +VITSA+EAQAFTPGSFIAGS+WLGSTGFPFSLGL
Sbjct: 538 AGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584
>emb|CAC01624.1| putative pectin methylesterase [Populus tremula x Populus
tremuloides]
Length = 579
Score = 185 bits (470), Expect = 4e-46
Identities = 86/106 (81%), Positives = 94/106 (88%)
Frame = -2
Query: 665 PVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQNPGPGA 486
PV+ SFPTYLGRPWKEYSRTV MQSSI+DVI PAGWHEWSG+FAL+TL Y EYQN G GA
Sbjct: 474 PVQSSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWSGSFALSTLFYAEYQNSGAGA 533
Query: 485 GTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 348
GTS RV W+G KVITSA+EAQAF PG+FIAGS+WLGST FPFSLGL
Sbjct: 534 GTSSRVKWEGYKVITSATEAQAFAPGNFIAGSSWLGSTSFPFSLGL 579
>emb|CAB95025.1| pectin methylesterase [Nicotiana tabacum]
Length = 579
Score = 184 bits (467), Expect = 9e-46
Identities = 86/106 (81%), Positives = 93/106 (87%)
Frame = -2
Query: 665 PVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQNPGPGA 486
PV+ SFPTYLGRPWKEYSRTV MQSSI+DVI+ AGWHEW+GNFALNTL Y EYQN G GA
Sbjct: 474 PVQKSFPTYLGRPWKEYSRTVIMQSSITDVINSAGWHEWNGNFALNTLFYGEYQNTGAGA 533
Query: 485 GTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 348
GTS RV WKG KVITSA+EAQA+TPG FIAG +WL STGFPFSLGL
Sbjct: 534 GTSGRVKWKGFKVITSATEAQAYTPGRFIAGGSWLSSTGFPFSLGL 579
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 632,373,374
Number of Sequences: 1393205
Number of extensions: 15127014
Number of successful extensions: 45579
Number of sequences better than 10.0: 215
Number of HSP's better than 10.0 without gapping: 43644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45475
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
