Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004079A_C01 KMC004079A_c01
(392 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB21766.2| KIAA1675 protein [Homo sapiens] 32 1.9
dbj|BAB84297.1| transcription factor MEL1 [Homo sapiens] 32 1.9
ref|NP_071397.1| PR domain containing 16 [Homo sapiens] gi|11244... 32 1.9
sp|Q9HAZ2|PRDG_HUMAN PR-domain zinc finger protein 16 (Transcrip... 32 1.9
ref|NP_031989.1| ecotropic viral integration site 1 [Mus musculu... 32 2.5
>dbj|BAB21766.2| KIAA1675 protein [Homo sapiens]
Length = 1286
Score = 32.0 bits (71), Expect = 1.9
Identities = 22/84 (26%), Positives = 33/84 (39%)
Frame = +3
Query: 33 CHHVHKRY*QLSNMSKSKEKHKDAKCQRS*AKKIQ*ITN*TRFRTKSFFRSSLSSINKVL 212
C HK Y Q SN+ + K H D + Q + + S+ SS+NK
Sbjct: 406 CEVCHKSYTQFSNLCRHKRMHADCRTQ-------------IKCKDCGQMFSTTSSLNKHR 452
Query: 213 HIASSFNNFKAFEKEAPSMPSSPS 284
N++ AP +P +PS
Sbjct: 453 RFCEGKNHYTPGGIFAPGLPLTPS 476
>dbj|BAB84297.1| transcription factor MEL1 [Homo sapiens]
Length = 1257
Score = 32.0 bits (71), Expect = 1.9
Identities = 22/84 (26%), Positives = 33/84 (39%)
Frame = +3
Query: 33 CHHVHKRY*QLSNMSKSKEKHKDAKCQRS*AKKIQ*ITN*TRFRTKSFFRSSLSSINKVL 212
C HK Y Q SN+ + K H D + Q + + S+ SS+NK
Sbjct: 396 CEVCHKSYTQFSNLCRHKRMHADCRTQ-------------IKCKDCGQMFSTTSSLNKHR 442
Query: 213 HIASSFNNFKAFEKEAPSMPSSPS 284
N++ AP +P +PS
Sbjct: 443 RFCEGKNHYTPGGIFAPGLPLTPS 466
>ref|NP_071397.1| PR domain containing 16 [Homo sapiens]
gi|11244873|gb|AAG33382.1|AF294278_1
PR-domain-containing protein 16 [Homo sapiens]
Length = 1276
Score = 32.0 bits (71), Expect = 1.9
Identities = 22/84 (26%), Positives = 33/84 (39%)
Frame = +3
Query: 33 CHHVHKRY*QLSNMSKSKEKHKDAKCQRS*AKKIQ*ITN*TRFRTKSFFRSSLSSINKVL 212
C HK Y Q SN+ + K H D + Q + + S+ SS+NK
Sbjct: 397 CEVCHKSYTQFSNLCRHKRMHADCRTQ-------------IKCKDCGQMFSTTSSLNKHR 443
Query: 213 HIASSFNNFKAFEKEAPSMPSSPS 284
N++ AP +P +PS
Sbjct: 444 RFCEGKNHYTPGGIFAPGLPLTPS 467
>sp|Q9HAZ2|PRDG_HUMAN PR-domain zinc finger protein 16 (Transcription factor MEL1)
Length = 1276
Score = 32.0 bits (71), Expect = 1.9
Identities = 22/84 (26%), Positives = 33/84 (39%)
Frame = +3
Query: 33 CHHVHKRY*QLSNMSKSKEKHKDAKCQRS*AKKIQ*ITN*TRFRTKSFFRSSLSSINKVL 212
C HK Y Q SN+ + K H D + Q + + S+ SS+NK
Sbjct: 396 CEVCHKSYTQFSNLCRHKRMHADCRTQ-------------IKCKDCGQMFSTTSSLNKHR 442
Query: 213 HIASSFNNFKAFEKEAPSMPSSPS 284
N++ AP +P +PS
Sbjct: 443 RFCEGKNHYTPGGIFAPGLPLTPS 466
>ref|NP_031989.1| ecotropic viral integration site 1 [Mus musculus]
gi|202447|gb|AAA40581.1| zinc finger protein (see
comment)
Length = 1032
Score = 31.6 bits (70), Expect = 2.5
Identities = 26/95 (27%), Positives = 40/95 (41%), Gaps = 4/95 (4%)
Frame = +3
Query: 12 INNSNNP--CHHVHKRY*QLSNMSKSKEKHKDAKCQRS*AKKIQ*ITN*TRFRTKSFFRS 185
I++S P C HK Y Q SN+ + K H D + Q + + S
Sbjct: 171 IHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQ-------------IKCKDCGQMFS 217
Query: 186 SLSSINKVLHIASSFNNFKA--FEKEAPSMPSSPS 284
+ SS+NK N+F A F + S+P +P+
Sbjct: 218 TTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPA 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,421,080
Number of Sequences: 1393205
Number of extensions: 5462742
Number of successful extensions: 16469
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 15959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16452
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
