Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004078A_C01 KMC004078A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680765.1| similar to 3-hydroxy-3-methylglutaryl-coenzyme ... 34 0.93
sp|O31018|OTCC_RHIET Ornithine carbamoyltransferase, catabolic (... 32 3.5
gb|AAD33097.1|AF082525_1 homoserine kinase [Arabidopsis thaliana] 31 7.9
>ref|NP_680765.1| similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2;
protein id: At4g35295.1 [Arabidopsis thaliana]
Length = 111
Score = 34.3 bits (77), Expect = 0.93
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = -1
Query: 529 GNLKASANVQQLDRVGARLISS 464
GNLK++A+V++LD+VGARLI S
Sbjct: 89 GNLKSTASVKKLDKVGARLIES 110
>sp|O31018|OTCC_RHIET Ornithine carbamoyltransferase, catabolic (OTCase)
gi|2555171|gb|AAC46019.1| ArcB; catabolic ornithine
carbamoyltransferase; cOTCase [Rhizobium etli]
Length = 334
Score = 32.3 bits (72), Expect = 3.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 241 TTIWSIYGEP*DIFREMLSMLLFFSSSCYLRK---SPQQSFLHC 119
T +W GEP +++RE + +L + + L K +PQ F+HC
Sbjct: 231 TDVWVSMGEPKEVWRERIKLLTPYQVNQDLMKATGNPQTKFMHC 274
>gb|AAD33097.1|AF082525_1 homoserine kinase [Arabidopsis thaliana]
Length = 370
Score = 31.2 bits (69), Expect = 7.9
Identities = 13/22 (59%), Positives = 21/22 (95%)
Frame = -1
Query: 529 GNLKASANVQQLDRVGARLISS 464
G+LK+ A+V++LD+VGARL++S
Sbjct: 346 GHLKSVASVKKLDKVGARLVNS 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,193,597
Number of Sequences: 1393205
Number of extensions: 7307917
Number of successful extensions: 12152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12151
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
