Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004077A_C01 KMC004077A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA21352.1| hypothetical protein [Plasmodium yoelii yoelii] 33 1.5
gb|AAL79703.1|AC087599_22 putative chlorophyll synthase [Oryza s... 33 2.0
dbj|BAA82479.1| chlorophyll b synthase [Oryza sativa] 33 2.0
gb|AAG03051.1|AF284781_1 LLS1 protein [Oryza sativa] 33 2.0
ref|NP_473242.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.3
>gb|EAA21352.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2095
Score = 33.1 bits (74), Expect = 1.5
Identities = 18/63 (28%), Positives = 35/63 (54%)
Frame = +2
Query: 269 IREPSHPQLSPRLLPLNLSFDDVKSQSWSDLIIFIHNYINKSNQIRTTIPNYRSYLTKSK 448
I++ + RL L + D+ K++ + + ++F+ + ++NQ+ T NY+ YLT K
Sbjct: 133 IKKRKKGYIERRLRALKIIIDENKNKEYQENLLFLQIDL-ENNQLSTYDKNYKYYLTHYK 191
Query: 449 TKK 457
KK
Sbjct: 192 NKK 194
>gb|AAL79703.1|AC087599_22 putative chlorophyll synthase [Oryza sativa]
Length = 541
Score = 32.7 bits (73), Expect = 2.0
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 112 STKQ--RHIHKLHGSLISTRFQTKSMARVSATLAVWVHYI 225
STKQ H+H+LH L S+R +T+ + R+S A W+ ++
Sbjct: 429 STKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHV 468
>dbj|BAA82479.1| chlorophyll b synthase [Oryza sativa]
Length = 356
Score = 32.7 bits (73), Expect = 2.0
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 112 STKQ--RHIHKLHGSLISTRFQTKSMARVSATLAVWVHYI 225
STKQ H+H+LH L S+R +T+ + R+S A W+ ++
Sbjct: 244 STKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHV 283
>gb|AAG03051.1|AF284781_1 LLS1 protein [Oryza sativa]
Length = 540
Score = 32.7 bits (73), Expect = 2.0
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 112 STKQ--RHIHKLHGSLISTRFQTKSMARVSATLAVWVHYI 225
STKQ H+H+LH L S+R +T+ + R+S A W+ ++
Sbjct: 429 STKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHV 468
>ref|NP_473242.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494229|pir||T18456 hypothetical protein C0530w -
malaria parasite (Plasmodium falciparum)
gi|3764005|emb|CAA15598.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 579
Score = 32.0 bits (71), Expect = 3.3
Identities = 13/21 (61%), Positives = 18/21 (84%)
Frame = +1
Query: 391 IKSNQNHNSKLQKLSYKIKNK 453
I++N N+N+KLQKL Y +KNK
Sbjct: 176 IENNNNNNNKLQKLKYILKNK 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,915,866
Number of Sequences: 1393205
Number of extensions: 8239938
Number of successful extensions: 18753
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18752
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
