Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004076A_C01 KMC004076A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK73157.1|AC079022_30 putative protein kinase [Oryza sativa] 138 4e-32
gb|AAO18450.1| putative protein kinase [Oryza sativa (japonica c... 133 2e-30
gb|AAF79545.1|AC022464_3 F22G5.5 [Arabidopsis thaliana] 131 6e-30
ref|NP_172237.1| protein kinase APK1A; protein id: At1g07570.1 [... 131 6e-30
dbj|BAB63697.1| putative serine/threonine-specific protein kinas... 128 5e-29
>gb|AAK73157.1|AC079022_30 putative protein kinase [Oryza sativa]
Length = 395
Score = 138 bits (348), Expect = 4e-32
Identities = 63/98 (64%), Positives = 85/98 (86%)
Frame = -2
Query: 539 YSFGVVLLEIMSGKRALDQNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYTLREAM 360
YSFGVVLLE++SG+RALD+NRP+GEHNL+EWA+PYL +KRRIF+++DAR+ GQY+L +A
Sbjct: 266 YSFGVVLLEMLSGRRALDKNRPTGEHNLVEWARPYLMSKRRIFRILDARLGGQYSLAKAQ 325
Query: 359 KVANLAIQCLSVEPRFRPKMDEVVSVLEELQGSHDDTA 246
K A LA+QC+SVE + RP M++VV+VLE+LQ S + A
Sbjct: 326 KAATLALQCISVEAKNRPNMEQVVAVLEQLQDSKETGA 363
>gb|AAO18450.1| putative protein kinase [Oryza sativa (japonica cultivar-group)]
Length = 416
Score = 133 bits (334), Expect = 2e-30
Identities = 65/125 (52%), Positives = 86/125 (68%)
Frame = -2
Query: 539 YSFGVVLLEIMSGKRALDQNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYTLREAM 360
YSFGVVLLE+MSG+RA+D+NRP GEHNL+EWA+PYL++KR+IF+V+D R+EGQY+ A
Sbjct: 274 YSFGVVLLEMMSGRRAIDKNRPQGEHNLVEWARPYLTHKRKIFRVLDTRLEGQYSHVGAQ 333
Query: 359 KVANLAIQCLSVEPRFRPKMDEVVSVLEELQGSHDDTAGGVGTSRDQRAKRNVHSGPKQH 180
VA LA++CLS E + RP M+ VV++LEELQ S R + P +
Sbjct: 334 TVATLALECLSYEAKMRPSMEAVVTILEELQESSHVDRKPAAERRQESTTGTGKKAPTAN 393
Query: 179 RSKQS 165
SK S
Sbjct: 394 ASKNS 398
>gb|AAF79545.1|AC022464_3 F22G5.5 [Arabidopsis thaliana]
Length = 464
Score = 131 bits (329), Expect = 6e-30
Identities = 65/115 (56%), Positives = 87/115 (75%)
Frame = -2
Query: 539 YSFGVVLLEIMSGKRALDQNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYTLREAM 360
YSFGVVLLE++SG+RA+D+NRPSGE NL+EWAKPYL NKR+IF+V+D R++ QY++ EA
Sbjct: 292 YSFGVVLLELLSGRRAVDKNRPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEAC 351
Query: 359 KVANLAIQCLSVEPRFRPKMDEVVSVLEELQGSHDDTAGGVGTSRDQRAKRNVHS 195
KVA L+++CL+ E + RP M EVVS LE +Q S + GG D+R +R S
Sbjct: 352 KVATLSLRCLTTEIKLRPNMSEVVSHLEHIQ-SLNAAIGGNMDKTDRRMRRRSDS 405
>ref|NP_172237.1| protein kinase APK1A; protein id: At1g07570.1 [Arabidopsis
thaliana] gi|1168470|sp|Q06548|APKA_ARATH Protein kinase
APK1A gi|282877|pir||S28615
serine/threonine/tyrosine-specific protein kinase APK1
(EC 2.7.1.-) [validated] - Arabidopsis thaliana
gi|217829|dbj|BAA02092.1| protein
tyrosine-serine-threonine kinase [Arabidopsis thaliana]
gi|28393320|gb|AAO42086.1| putative protein kinase APK1A
[Arabidopsis thaliana] gi|28827602|gb|AAO50645.1|
putative protein kinase APK1A [Arabidopsis thaliana]
Length = 410
Score = 131 bits (329), Expect = 6e-30
Identities = 65/115 (56%), Positives = 87/115 (75%)
Frame = -2
Query: 539 YSFGVVLLEIMSGKRALDQNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYTLREAM 360
YSFGVVLLE++SG+RA+D+NRPSGE NL+EWAKPYL NKR+IF+V+D R++ QY++ EA
Sbjct: 264 YSFGVVLLELLSGRRAVDKNRPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEAC 323
Query: 359 KVANLAIQCLSVEPRFRPKMDEVVSVLEELQGSHDDTAGGVGTSRDQRAKRNVHS 195
KVA L+++CL+ E + RP M EVVS LE +Q S + GG D+R +R S
Sbjct: 324 KVATLSLRCLTTEIKLRPNMSEVVSHLEHIQ-SLNAAIGGNMDKTDRRMRRRSDS 377
>dbj|BAB63697.1| putative serine/threonine-specific protein kinase [Oryza sativa
(japonica cultivar-group)] gi|20160935|dbj|BAB89871.1|
putative serine/threonine-specific protein kinase [Oryza
sativa (japonica cultivar-group)]
Length = 467
Score = 128 bits (321), Expect = 5e-29
Identities = 57/91 (62%), Positives = 79/91 (86%)
Frame = -2
Query: 539 YSFGVVLLEIMSGKRALDQNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYTLREAM 360
YSFGVV++E++SG+RALD+NRP+GEHNL+EWA+PYLS++RRIF+++DAR+ GQY+L A
Sbjct: 330 YSFGVVMVEMLSGRRALDKNRPAGEHNLVEWARPYLSSRRRIFRILDARLAGQYSLAGAH 389
Query: 359 KVANLAIQCLSVEPRFRPKMDEVVSVLEELQ 267
K A LA+QCLS + + RP M +VV+ LE+LQ
Sbjct: 390 KAAALALQCLSADAKNRPTMHQVVAALEQLQ 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,207,756
Number of Sequences: 1393205
Number of extensions: 9705560
Number of successful extensions: 30922
Number of sequences better than 10.0: 1514
Number of HSP's better than 10.0 without gapping: 28572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30239
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
