Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004070A_C01 KMC004070A_c01
(418 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02200|PERX_NICSY Lignin forming anionic peroxidase precursor... 110 3e-24
pir||B56555 peroxidase (EC 1.11.1.7), anionic, precursor - wood ... 110 3e-24
ref|NP_172906.1| anionic peroxidase, putative; protein id: At1g1... 104 2e-22
ref|NP_196153.1| peroxidase, putative; protein id: At5g05340.1, ... 103 4e-22
pir||T10252 peroxidase (EC 1.11.1.7) - radish gi|1518388|emb|CAA... 103 5e-22
>sp|Q02200|PERX_NICSY Lignin forming anionic peroxidase precursor
gi|170203|gb|AAA34050.1| anionic peroxidase
Length = 322
Score = 110 bits (276), Expect = 3e-24
Identities = 53/70 (75%), Positives = 59/70 (83%)
Frame = -2
Query: 417 YFKNLIQKKGLLRSDQVLFRGGSTDTIVSEYSKNPTTFKSDFAAAMIKMGDIQPLTGSAG 238
YFKNLIQKKGLL+SDQVLF GGSTD IVSEYS + F SDFAAAMIKMGDI PL+G G
Sbjct: 253 YFKNLIQKKGLLQSDQVLFNGGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNG 312
Query: 237 IIRKICSAIN 208
IIRK+C ++N
Sbjct: 313 IIRKVCGSVN 322
>pir||B56555 peroxidase (EC 1.11.1.7), anionic, precursor - wood tobacco
Length = 322
Score = 110 bits (276), Expect = 3e-24
Identities = 53/70 (75%), Positives = 59/70 (83%)
Frame = -2
Query: 417 YFKNLIQKKGLLRSDQVLFRGGSTDTIVSEYSKNPTTFKSDFAAAMIKMGDIQPLTGSAG 238
YFKNLIQKKGLL+SDQVLF GGSTD IVSEYS + F SDFAAAMIKMGDI PL+G G
Sbjct: 253 YFKNLIQKKGLLQSDQVLFNGGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNG 312
Query: 237 IIRKICSAIN 208
IIRK+C ++N
Sbjct: 313 IIRKVCGSVN 322
>ref|NP_172906.1| anionic peroxidase, putative; protein id: At1g14540.1 [Arabidopsis
thaliana] gi|25453207|sp|Q9LE15|PER4_ARATH Peroxidase 4
precursor (Atperox P4) (ATP46)
gi|7262696|gb|AAF43954.1|AC012188_31 Strong similarity
to an Anionic Peroxidase Precursor from Nicotiana
sylvestris gi|1076611 and contains a Peroxidase PF|00141
domain. EST gb|AI996783 comes from this gene.
[Arabidopsis thaliana]
gi|7527729|gb|AAF63178.1|AC010657_14 T5E21.4
[Arabidopsis thaliana]
Length = 315
Score = 104 bits (260), Expect = 2e-22
Identities = 52/71 (73%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Frame = -2
Query: 417 YFKNLIQKKGLLRSDQVLF-RGGSTDTIVSEYSKNPTTFKSDFAAAMIKMGDIQPLTGSA 241
Y++NL+QKKGLL SDQVLF G STD+IV+EYS+NP+ F SDF+AAMIKMGDIQ LTGS
Sbjct: 245 YYRNLMQKKGLLESDQVLFGTGASTDSIVTEYSRNPSRFASDFSAAMIKMGDIQTLTGSD 304
Query: 240 GIIRKICSAIN 208
G IR+ICSA+N
Sbjct: 305 GQIRRICSAVN 315
>ref|NP_196153.1| peroxidase, putative; protein id: At5g05340.1, supported by cDNA:
gi_17529071 [Arabidopsis thaliana]
gi|26397801|sp|Q9FLC0|PE52_ARATH Peroxidase 52 precursor
(Atperox P52) (ATP49) gi|10176746|dbj|BAB09977.1|
peroxidase [Arabidopsis thaliana]
gi|17529072|gb|AAL38746.1| putative peroxidase
[Arabidopsis thaliana]
Length = 324
Score = 103 bits (258), Expect = 4e-22
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = -2
Query: 417 YFKNLIQKKGLLRSDQVLFRGGSTDTIVSEYSKNPTTFKSDFAAAMIKMGDIQPLTGSAG 238
YFKNL+ ++GLL SDQVLF GGSTD+IV YS NP++F SDF AAMIKMGDI PLTGS+G
Sbjct: 255 YFKNLMTQRGLLHSDQVLFNGGSTDSIVRGYSNNPSSFNSDFTAAMIKMGDISPLTGSSG 314
Query: 237 IIRKICSAIN 208
IRK+C N
Sbjct: 315 EIRKVCGRTN 324
>pir||T10252 peroxidase (EC 1.11.1.7) - radish gi|1518388|emb|CAA62597.1|
korean-radish isoperoxidase [Raphanus sativus]
Length = 315
Score = 103 bits (257), Expect = 5e-22
Identities = 49/70 (70%), Positives = 58/70 (82%)
Frame = -2
Query: 417 YFKNLIQKKGLLRSDQVLFRGGSTDTIVSEYSKNPTTFKSDFAAAMIKMGDIQPLTGSAG 238
YFKNL+ ++GLL SDQVLF GGSTD+IV YS +P++F SDFAAAMIKMGDI PLTGS+G
Sbjct: 246 YFKNLMAQRGLLHSDQVLFNGGSTDSIVRGYSNSPSSFNSDFAAAMIKMGDISPLTGSSG 305
Query: 237 IIRKICSAIN 208
IRK+C N
Sbjct: 306 EIRKVCGRTN 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293,598,935
Number of Sequences: 1393205
Number of extensions: 5140269
Number of successful extensions: 10915
Number of sequences better than 10.0: 410
Number of HSP's better than 10.0 without gapping: 10574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10756
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
