Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004066A_C01 KMC004066A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC56296.1| envelope glycoprotein, C2-V5 region 33 2.2
ref|NP_692599.1| hypothetical protein [Oceanobacillus iheyensis ... 33 2.9
ref|XP_142725.1| similar to gonadotropin inducible ovarian trans... 33 2.9
gb|AAC56264.1| envelope glycoprotein, C2-V5 region 33 3.8
gb|AAC56263.1| envelope glycoprotein, C2-V5 region 32 6.5
>gb|AAC56296.1| envelope glycoprotein, C2-V5 region
Length = 218
Score = 33.5 bits (75), Expect = 2.2
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -2
Query: 435 FIPNTTRTQEEWRQYWINGCWNGFAGSHVVINLCKKKMV 319
F NTT+ + W NG WNG G+ + CK+K++
Sbjct: 123 FYCNTTQL---FNSTWANGTWNGTVGNDTITLTCKRKLI 158
>ref|NP_692599.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22777361|dbj|BAC13634.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 155
Score = 33.1 bits (74), Expect = 2.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 283 WTRLQRIIF*FGHHFLFTQVYYYMAASKPIPTPIDPILPPLFLSTGSIRY 432
W ++F F T ++ M ASK T ILPP+F+STG++ +
Sbjct: 3 WAIASTVVFAF---MAITMIFVRMRASKKPATAKKIILPPIFMSTGALMF 49
>ref|XP_142725.1| similar to gonadotropin inducible ovarian transcription factor 1
[Rattus norvegicus] [Mus musculus]
Length = 417
Score = 33.1 bits (74), Expect = 2.9
Identities = 28/122 (22%), Positives = 55/122 (44%), Gaps = 1/122 (0%)
Frame = +3
Query: 21 IEENVLSYDHG*MKVIYNIIEPLQPSPMENTDGSTLHKRQVFEIIKLHPCLLVEPMTTTM 200
I+E++L D M VI N+++PL + + + +R +I + L V ++ +
Sbjct: 278 IKEHIL--DRNPMNVI-NVVKPLHDPVISSVIVEHILERNPMNVINVVKLLQVTVVSNII 334
Query: 201 HKNYIQCDGPSIATQFTNIDNYLQSPMLDKTTKNHILIRTPFSFY-TSLLLHGCQQTHSN 377
+ ++ + ++ N+ LQ P++ + HIL R P + + H Q H
Sbjct: 335 KERILERNPMNVI----NVVMLLQDPVISNVIREHILERNPKNVIGKAFACHSHLQRHVT 390
Query: 378 TH 383
TH
Sbjct: 391 TH 392
>gb|AAC56264.1| envelope glycoprotein, C2-V5 region
Length = 218
Score = 32.7 bits (73), Expect = 3.8
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -2
Query: 414 TQEEWRQYWINGCWNGFAGSHVVINLCKKKMV 319
T + + W+NG WNG G+ + CK K++
Sbjct: 127 TTQLFNSTWVNGTWNGTVGNDTITLTCKCKLI 158
>gb|AAC56263.1| envelope glycoprotein, C2-V5 region
Length = 218
Score = 32.0 bits (71), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = -2
Query: 435 FIPNTTRTQEEWRQYWINGCWNGFAGSHVVINLCKKKMV 319
F NTT+ + W NG WNG G+ + CK K++
Sbjct: 123 FYCNTTQL---FNSTWANGTWNGTVGNDTITLTCKLKLI 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,052,600
Number of Sequences: 1393205
Number of extensions: 12644930
Number of successful extensions: 32999
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 32098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32991
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
