Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004065A_C01 KMC004065A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC37355.1| putative membrane protein [Solanum tuberosum] 112 3e-24
emb|CAC37358.1| putative membrane protein [Solanum tuberosum] 112 3e-24
emb|CAC37356.1| putative membrane protein [Solanum tuberosum] 112 4e-24
emb|CAC37357.1| putative membrane protein [Solanum tuberosum] 111 7e-24
gb|AAL57706.1| AT4g17280/dl4675c [Arabidopsis thaliana] gi|27363... 109 3e-23
>emb|CAC37355.1| putative membrane protein [Solanum tuberosum]
Length = 400
Score = 112 bits (280), Expect = 3e-24
Identities = 55/102 (53%), Positives = 70/102 (67%), Gaps = 1/102 (0%)
Frame = -1
Query: 571 ALFLRLNKDHKHRFYWNIYHHLIGYSTIIISIINVFKGFDTLENYVGDRYDNWKNAYIGI 392
AL LR DHK+R YWNIYHH +GY+ I ++I NVF+GFD L NWK AY G+
Sbjct: 296 ALLLRPKPDHKYRLYWNIYHHAVGYAVISLAIANVFEGFDALNG-----QKNWKRAYTGV 350
Query: 391 IAALGGIAVLLEAYTWIIVLKRRQSESKTSHGINGAHG-ANP 269
I A+G IAVLLEA+TW IV+KR++++S H NG +G NP
Sbjct: 351 IIAIGAIAVLLEAFTWFIVIKRKKTDS-NKHTQNGTNGTVNP 391
>emb|CAC37358.1| putative membrane protein [Solanum tuberosum]
Length = 400
Score = 112 bits (280), Expect = 3e-24
Identities = 55/102 (53%), Positives = 70/102 (67%), Gaps = 1/102 (0%)
Frame = -1
Query: 571 ALFLRLNKDHKHRFYWNIYHHLIGYSTIIISIINVFKGFDTLENYVGDRYDNWKNAYIGI 392
AL LR DHK+R YWNIYHH +GY+ I ++I NVF+GFD L NWK AY G+
Sbjct: 296 ALLLRPKPDHKYRLYWNIYHHAVGYAVISLAITNVFQGFDALNG-----QKNWKRAYTGV 350
Query: 391 IAALGGIAVLLEAYTWIIVLKRRQSESKTSHGINGAHG-ANP 269
I A+G IAVLLEA+TW IV+KR++++S H NG +G NP
Sbjct: 351 IIAIGAIAVLLEAFTWFIVIKRKKTDS-NKHTQNGTNGTVNP 391
>emb|CAC37356.1| putative membrane protein [Solanum tuberosum]
Length = 402
Score = 112 bits (279), Expect = 4e-24
Identities = 58/100 (58%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Frame = -1
Query: 571 ALFLRLNKDHKHRFYWNIYHHLIGYSTIIISIINVFKGFDTLENYVGDRYDNWKNAYIGI 392
AL LR DHK R YWNIYHH+ GY+ II+SIINVF+GFD L NWK AYIG+
Sbjct: 299 ALLLRPKPDHKFRLYWNIYHHVTGYTVIILSIINVFEGFDALNG-----QKNWKKAYIGV 353
Query: 391 IAALGGIAVLLEAYTWIIVLKRRQS--ESKTSHGINGAHG 278
I LG IAVLLEA TW IV+KR+++ K HG NG +G
Sbjct: 354 IIFLGAIAVLLEAITWFIVIKRKKTSVSDKYPHG-NGTNG 392
>emb|CAC37357.1| putative membrane protein [Solanum tuberosum]
Length = 400
Score = 111 bits (277), Expect = 7e-24
Identities = 54/102 (52%), Positives = 70/102 (67%), Gaps = 1/102 (0%)
Frame = -1
Query: 571 ALFLRLNKDHKHRFYWNIYHHLIGYSTIIISIINVFKGFDTLENYVGDRYDNWKNAYIGI 392
AL LR DHK+R YWNIYHH +GY+ I ++I NVF+GFD L NWK AY G+
Sbjct: 296 ALLLRPKPDHKYRLYWNIYHHAVGYAVISLAIANVFQGFDALNG-----QKNWKRAYTGV 350
Query: 391 IAALGGIAVLLEAYTWIIVLKRRQSESKTSHGINGAHG-ANP 269
I A+G IAVLLEA+TW IV+KR+++++ H NG +G NP
Sbjct: 351 IIAIGAIAVLLEAFTWFIVIKRKKTDT-NKHTQNGTNGTVNP 391
>gb|AAL57706.1| AT4g17280/dl4675c [Arabidopsis thaliana] gi|27363428|gb|AAO11633.1|
At4g17280/dl4675c [Arabidopsis thaliana]
Length = 402
Score = 109 bits (272), Expect = 3e-23
Identities = 53/100 (53%), Positives = 67/100 (67%)
Frame = -1
Query: 571 ALFLRLNKDHKHRFYWNIYHHLIGYSTIIISIINVFKGFDTLENYVGDRYDNWKNAYIGI 392
A+FLR +HKHR YWNIYHH IGY+ II+ ++NVFKG L WKNAYIGI
Sbjct: 305 AMFLRPKPEHKHRLYWNIYHHTIGYTIIILGVVNVFKGLGIL-----SPKKQWKNAYIGI 359
Query: 391 IAALGGIAVLLEAYTWIIVLKRRQSESKTSHGINGAHGAN 272
I L +A LLEA+TW +V+KRR+ E+KT+ HGA+
Sbjct: 360 IVVLAIVATLLEAFTWYVVIKRRKLEAKTAQ-----HGAS 394
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,752,013
Number of Sequences: 1393205
Number of extensions: 10304579
Number of successful extensions: 27712
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 26673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27649
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
