Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004064A_C01 KMC004064A_c01
(465 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42151.1| unknown protein [Arabidopsis thaliana] 53 1e-06
gb|AAO37950.1| putative nitrate-induced protein [Oryza sativa (j... 41 0.005
pir||T01320 NOI protein, nitrate-induced - maize gi|2642213|gb|A... 38 0.060
dbj|BAB02065.1| contains similarity to nitrate-induced NOI prote... 37 0.078
ref|NP_189143.1| unknown protein; protein id: At3g25070.1 [Arabi... 37 0.078
>dbj|BAC42151.1| unknown protein [Arabidopsis thaliana]
Length = 211
Score = 53.1 bits (126), Expect = 1e-06
Identities = 26/49 (53%), Positives = 30/49 (61%)
Frame = -2
Query: 464 GFTHIFNKVREERQGGAGNALGTPERPHVIRSQPSNDKVQCCCFGFSKK 318
G+THIFNKVREER GA N G+ P S+ N+ CCCFGF K
Sbjct: 164 GYTHIFNKVREERSSGA-NVSGSSRTPTHQSSRNPNNTSSCCCFGFGGK 211
>gb|AAO37950.1| putative nitrate-induced protein [Oryza sativa (japonica
cultivar-group)]
Length = 242
Score = 41.2 bits (95), Expect = 0.005
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -2
Query: 464 GFTHIFNKVREERQGGAGNA-LGTPERPHVIR-SQPSNDKVQCCCFGFSK 321
GFT IF KVREE+Q G GNA + T E ++ R Q + C CF + K
Sbjct: 192 GFTDIFEKVREEKQSGTGNAPVMTSEADYIKRYQQRKYESTGCSCFSWFK 241
>pir||T01320 NOI protein, nitrate-induced - maize gi|2642213|gb|AAB86937.1|
nitrate-induced NOI protein [Zea mays]
gi|2895781|gb|AAC03022.1| nitrate-induced NOI protein
[Zea mays]
Length = 80
Score = 37.7 bits (86), Expect = 0.060
Identities = 20/48 (41%), Positives = 26/48 (53%), Gaps = 6/48 (12%)
Frame = -2
Query: 464 GFTHIFNKVREERQGGAGNALGTP------ERPHVIRSQPSNDKVQCC 339
GFT IFNK R+E++GG G +P ER ++PS K CC
Sbjct: 25 GFTVIFNKARDEKKGGNGQDTDSPSKDPRTERVESYAAKPSTKKWFCC 72
>dbj|BAB02065.1| contains similarity to nitrate-induced NOI protein~gene_id:MJL12.1
[Arabidopsis thaliana]
Length = 351
Score = 37.4 bits (85), Expect = 0.078
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 464 GFTHIFNKVREERQGGAGNALGTPERP-HVIRSQPSN 357
G+THIFNKVREER GA N G+ P H P+N
Sbjct: 237 GYTHIFNKVREERSSGA-NVSGSSRTPTHQSSRNPNN 272
>ref|NP_189143.1| unknown protein; protein id: At3g25070.1 [Arabidopsis thaliana]
Length = 215
Score = 37.4 bits (85), Expect = 0.078
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 464 GFTHIFNKVREERQGGAGNALGTPERP-HVIRSQPSN 357
G+THIFNKVREER GA N G+ P H P+N
Sbjct: 164 GYTHIFNKVREERSSGA-NVSGSSRTPTHQSSRNPNN 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,506,102
Number of Sequences: 1393205
Number of extensions: 8033606
Number of successful extensions: 25085
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25027
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
