Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004061A_C01 KMC004061A_c01
(414 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194434.1| SNF8 like protein; protein id: At4g27040.1 [Ara... 99 1e-20
gb|EAA06892.1| agCP7421 [Anopheles gambiae str. PEST] 42 0.001
gb|AAH38830.1| EAP30 subunit of ELL complex [Homo sapiens] 40 0.005
ref|NP_009172.2| EAP30 subunit of ELL complex [Homo sapiens] gi|... 40 0.005
ref|NP_291046.1| EAP30 subunit of ELL complex [Mus musculus] gi|... 40 0.005
>ref|NP_194434.1| SNF8 like protein; protein id: At4g27040.1 [Arabidopsis thaliana]
gi|7488343|pir||T04827 SNF8 protein homolog F10M23.380 -
Arabidopsis thaliana gi|4455227|emb|CAB36550.1| SNF8
like protein [Arabidopsis thaliana]
gi|7269557|emb|CAB79559.1| SNF8 like protein
[Arabidopsis thaliana]
Length = 181
Score = 99.0 bits (245), Expect = 1e-20
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = -2
Query: 410 FVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVSPISSLIGIDS 231
FV V+EV+RRLSWTSGR IDAL+TLL+EGLAMID+GH+DGK RYWFPCVS + S IG D+
Sbjct: 122 FVIVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGHKDGKCRYWFPCVSSVYSSIGSDT 181
>gb|EAA06892.1| agCP7421 [Anopheles gambiae str. PEST]
Length = 250
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = -2
Query: 410 FVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVSP 258
FVTV + L WT RA A++ +L EG+A ID + ++ YWFP + P
Sbjct: 195 FVTVASLMSDLGWTQARAEQAVEKMLGEGMAWIDT--QGEEKSYWFPSLFP 243
>gb|AAH38830.1| EAP30 subunit of ELL complex [Homo sapiens]
Length = 257
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/49 (40%), Positives = 28/49 (56%)
Frame = -2
Query: 410 FVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCV 264
+VTV E++ L W + RA L+ LL EGLA + D G+ YW P +
Sbjct: 191 YVTVSEIKASLKWETERARQVLEHLLKEGLAWL-DLQAPGEAHYWLPAL 238
>ref|NP_009172.2| EAP30 subunit of ELL complex [Homo sapiens]
gi|14290426|gb|AAH08976.1|AAH08976 Unknown (protein for
MGC:9336) [Homo sapiens]
Length = 258
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/49 (40%), Positives = 28/49 (56%)
Frame = -2
Query: 410 FVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCV 264
+VTV E++ L W + RA L+ LL EGLA + D G+ YW P +
Sbjct: 192 YVTVSEIKASLKWETERARQVLEHLLKEGLAWL-DLQAPGEAHYWLPAL 239
>ref|NP_291046.1| EAP30 subunit of ELL complex [Mus musculus]
gi|12850188|dbj|BAB28626.1| unnamed protein product [Mus
musculus] gi|13278196|gb|AAH03938.1| Similar to EAP30
subunit of ELL complex [Mus musculus]
Length = 258
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/49 (40%), Positives = 28/49 (56%)
Frame = -2
Query: 410 FVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCV 264
+VTV E++ L W + RA L+ LL EGLA + D G+ YW P +
Sbjct: 192 YVTVSEIKTSLKWETERARQVLEHLLKEGLAWL-DLQAPGEAHYWLPAL 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 348,988,241
Number of Sequences: 1393205
Number of extensions: 6919842
Number of successful extensions: 18670
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 18098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18643
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
