Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004060A_C01 KMC004060A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175542.1| unknown protein; protein id: At1g51310.1 [Arabi... 87 2e-16
gb|AAK83925.1|AF401089_1 RNA polymerase beta-subunit [Ehrlichia ... 32 8.6
gb|EAA21888.1| Zinc finger, C2H2 type, putative [Plasmodium yoel... 32 8.6
>ref|NP_175542.1| unknown protein; protein id: At1g51310.1 [Arabidopsis thaliana]
gi|25298371|pir||H96550 hypothetical protein F11M15.16
[imported] - Arabidopsis thaliana
gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein
[Arabidopsis thaliana]
Length = 421
Score = 86.7 bits (213), Expect = 2e-16
Identities = 39/64 (60%), Positives = 49/64 (75%)
Frame = -3
Query: 613 YEGRTCIGSGVILESWDDQSFPVCAKALEIARMEDKSKIGNPVKIKVKPDIPQEVCDSKE 434
YEG TCIGSGVILESWDDQ FPVCAKAL++A +EDK+K+G PVKI P + D+ E
Sbjct: 352 YEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMTMPTMSSVEADTGE 411
Query: 433 LASK 422
+++
Sbjct: 412 ASAE 415
>gb|AAK83925.1|AF401089_1 RNA polymerase beta-subunit [Ehrlichia risticii]
Length = 1363
Score = 31.6 bits (70), Expect = 8.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 471 NQISHKKCVIPKSWRVKHHKGVTGVAATEQNRLTYKRNAVSYSLSWR 331
N H++CV+ + RVK + A +Q L RN V LSWR
Sbjct: 759 NTCIHQRCVVYQGQRVKKGDILADGPAIQQGELALGRNLVVAFLSWR 805
>gb|EAA21888.1| Zinc finger, C2H2 type, putative [Plasmodium yoelii yoelii]
Length = 3189
Score = 31.6 bits (70), Expect = 8.6
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = -1
Query: 543 VQKL*KLQEWKINQ-RLVIQLR*KLNQISHKKCVIPKSWRVKHHKGVTGVAATEQNRLTY 367
VQ KL K+N RL+ L+ K N I +KK V K+ +V K V QN+L Y
Sbjct: 1960 VQNKIKLISNKLNTFRLIYYLKNKTNSIPYKKIVWNKANQVMIGKFKYAVCKYIQNKLFY 2019
Query: 366 --KRNAVSY 346
K+N V+Y
Sbjct: 2020 YFKKNIVNY 2028
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,657,896
Number of Sequences: 1393205
Number of extensions: 11487506
Number of successful extensions: 25247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25244
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
