Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004059A_C01 KMC004059A_c01
(421 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC53770.1| DNA gyrase B subunit [Marinospirillum insularis] 30 5.4
ref|ZP_00063012.1| hypothetical protein [Leuconostoc mesenteroid... 30 5.4
dbj|BAA94394.1| Wzz homolog [Actinobacillus actinomycetemcomitans] 30 7.0
ref|NP_110880.1| Predicted membrane protein [Thermoplasma volcan... 30 9.2
emb|CAC01135.1| immunoglobulin heavy chain variable region [Homo... 30 9.2
>dbj|BAC53770.1| DNA gyrase B subunit [Marinospirillum insularis]
Length = 390
Score = 30.4 bits (67), Expect = 5.4
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Frame = -1
Query: 388 TIWKA----EKVYSHSIPETKLNMLHTQF*RDEVGRVEKRTVLILFR 260
TIW+ E+VYSH +P+T L + +G EK L+ FR
Sbjct: 28 TIWRDKQVHEQVYSHGVPQTPLTV---------IGETEKSGTLVRFR 65
>ref|ZP_00063012.1| hypothetical protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 266
Score = 30.4 bits (67), Expect = 5.4
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -2
Query: 396 IPALYGKLKKYIHTLFQRRSSTCCILNSEEMRLVE 292
+PA K+++Y+ Q++SS L++E++RLVE
Sbjct: 176 LPAGQKKVQRYVEKQLQKKSSEASKLSAEQLRLVE 210
>dbj|BAA94394.1| Wzz homolog [Actinobacillus actinomycetemcomitans]
Length = 369
Score = 30.0 bits (66), Expect = 7.0
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = -3
Query: 254 VWMIQTLWKADVWAFKFSLKYKT*F*GLGVVALIEQWTSTCCIL 123
V +I+ LW +W FSL + T G+ V EQWTS I+
Sbjct: 14 VELIKVLWNKRLWIILFSLFFTT-IAGIYVFTAKEQWTSKAEII 56
>ref|NP_110880.1| Predicted membrane protein [Thermoplasma volcanium]
Length = 416
Score = 29.6 bits (65), Expect = 9.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 133 VAYSIFRLAAVYLSNLHIFPLHIRGSFEF 47
VAYSI LA YLSN+ ++ L +R E+
Sbjct: 342 VAYSILPLAIFYLSNVAVYNLWVRFPLEY 370
>emb|CAC01135.1| immunoglobulin heavy chain variable region [Homo sapiens]
Length = 81
Score = 29.6 bits (65), Expect = 9.2
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 416 SISLGGLSQHYMES*KSIFTLYSRDEAQHVAYSILKR 306
S+S G+S+HY +S K FT+ SRD +++ Y + R
Sbjct: 20 SVSGSGISRHYSDSVKGRFTI-SRDNSKNTLYLQMNR 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335,298,401
Number of Sequences: 1393205
Number of extensions: 6223821
Number of successful extensions: 10857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10854
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
