Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004058A_C01 KMC004058A_c01
(450 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194261.1| SRG1-like protein; protein id: At4g25310.1 [Ara... 35 0.21
gb|AAL79783.1|AC079874_6 putative ethylene-forming enzyme [Oryza... 35 0.27
gb|AAL79802.1|AC079874_25 putative ethylene-forming enzyme [Oryz... 33 0.60
ref|XP_222442.1| similar to olfactory receptor MOR108-4 [Mus mus... 33 0.60
ref|NP_194260.1| SRG1-like protein; protein id: At4g25300.1 [Ara... 33 0.79
>ref|NP_194261.1| SRG1-like protein; protein id: At4g25310.1 [Arabidopsis thaliana]
gi|7433186|pir||T05552 SRG1 protein-related protein
F24A6.150 - Arabidopsis thaliana
gi|4454019|emb|CAA23072.1| SRG1-like protein
[Arabidopsis thaliana] gi|7269382|emb|CAB81342.1|
SRG1-like protein [Arabidopsis thaliana]
Length = 353
Score = 35.0 bits (79), Expect = 0.21
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = -3
Query: 445 AIFKTIGLLEYFRGYHAKELSGRSYLESLR 356
A+FKT+ EYF G ++EL G++YL+ +R
Sbjct: 323 ALFKTLTTEEYFHGLFSRELDGKAYLDVMR 352
>gb|AAL79783.1|AC079874_6 putative ethylene-forming enzyme [Oryza sativa]
Length = 347
Score = 34.7 bits (78), Expect = 0.27
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = -3
Query: 445 AIFKTIGLLEYFRGYHAKELSGRSYLESLR 356
A +KT+ ++E+ +GY +L GRSYLE L+
Sbjct: 315 AHYKTVDVVEFTKGYFTAKLEGRSYLERLK 344
>gb|AAL79802.1|AC079874_25 putative ethylene-forming enzyme [Oryza sativa]
Length = 360
Score = 33.5 bits (75), Expect = 0.60
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 445 AIFKTIGLLEYFRGYHAKELSGRSYLESLR 356
A +KT+ E+ +GY A +L GR YLESL+
Sbjct: 328 ARYKTVDGAEFTKGYFAAKLEGRRYLESLK 357
>ref|XP_222442.1| similar to olfactory receptor MOR108-4 [Mus musculus] [Rattus
norvegicus]
Length = 241
Score = 33.5 bits (75), Expect = 0.60
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -2
Query: 269 CLTLLWTSVFLFYFLMYVLCTINCVHFHPLCKSTRFYSIAYS-LC-RLIIGEYMTLYYIV 96
C L+ +FL +++L +++C H+ +CK + +I S +C +LII ++ + ++
Sbjct: 19 CAAQLFFFIFLGLTKLFLLASVSCDHYVAICKPLHYTTIISSKICHQLIISSWLADFLVI 78
Query: 95 F 93
F
Sbjct: 79 F 79
>ref|NP_194260.1| SRG1-like protein; protein id: At4g25300.1 [Arabidopsis thaliana]
gi|7433185|pir||T05551 SRG1 protein-related protein
F24A6.140 - Arabidopsis thaliana
gi|4454018|emb|CAA23071.1| SRG1-like protein
[Arabidopsis thaliana] gi|7269381|emb|CAB81341.1|
SRG1-like protein [Arabidopsis thaliana]
Length = 356
Score = 33.1 bits (74), Expect = 0.79
Identities = 13/30 (43%), Positives = 21/30 (69%)
Frame = -3
Query: 445 AIFKTIGLLEYFRGYHAKELSGRSYLESLR 356
A FK++ EYF G ++EL G++YL+ +R
Sbjct: 326 AFFKSVTTEEYFNGLFSRELDGKAYLDVMR 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,089,312
Number of Sequences: 1393205
Number of extensions: 6745686
Number of successful extensions: 16832
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 16277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16818
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
