Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004055A_C01 KMC004055A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94HF1|IF3B_ORYSA Eukaryotic translation initiation factor 3 ... 132 2e-30
ref|NP_195051.1| putative protein; protein id: At4g33250.1, supp... 116 2e-25
gb|AAM19805.1| AT4g33250/F17M5_10 [Arabidopsis thaliana] 86 3e-16
ref|NP_704200.1| modification methylase-like protein, putative [... 37 0.23
gb|AAH07335.1|AAH07335 Similar to muscle specific gene [Homo sap... 33 3.3
>sp|Q94HF1|IF3B_ORYSA Eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25)
(eIF3k) gi|15217293|gb|AAK92637.1|AC079633_17 Unknown
protein [Oryza sativa]
Length = 226
Score = 132 bits (333), Expect = 2e-30
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = -2
Query: 573 HVISLTYXKVPRTVLAEAINVEGLSLDKFLEHQVANSGWAIEKSQGKGQLIVIPRNEFND 394
HV+SLTY KVPR VLAEAIN+EGL+LDKFLEH +ANSGW IEK + QLIV+PRNEFN
Sbjct: 144 HVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIEKG-ARSQLIVLPRNEFNH 202
Query: 393 PILKKNTADSVPLEHITRIFPILS 322
P LKKNTA++VP EH+TRIFP+LS
Sbjct: 203 PELKKNTAETVPFEHVTRIFPVLS 226
>ref|NP_195051.1| putative protein; protein id: At4g33250.1, supported by cDNA:
gi_12407752, supported by cDNA: gi_14335023, supported
by cDNA: gi_15292988, supported by cDNA: gi_20147104,
supported by cDNA: gi_20258862 [Arabidopsis thaliana]
gi|23396627|sp|Q9SZA3|IF3B_ARATH Eukaryotic translation
initiation factor 3 subunit 11 (eIF-3 p25) (eIF3k)
gi|7485649|pir||T05976 hypothetical protein F17M5.10 -
Arabidopsis thaliana gi|4490292|emb|CAB38783.1| putative
protein [Arabidopsis thaliana]
gi|7270273|emb|CAB80042.1| putative protein [Arabidopsis
thaliana] gi|12407753|gb|AAG53637.1|AF291713_1
initiation factor 3k [Arabidopsis thaliana]
gi|14335024|gb|AAK59776.1| AT4g33250/F17M5_10
[Arabidopsis thaliana] gi|15292989|gb|AAK93605.1|
unknown protein [Arabidopsis thaliana]
gi|20147105|gb|AAM10269.1| AT4g33250/F17M5_10
[Arabidopsis thaliana] gi|20258863|gb|AAM14103.1|
unknown protein [Arabidopsis thaliana]
Length = 226
Score = 116 bits (290), Expect = 2e-25
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = -2
Query: 573 HVISLTYXKVPRTVLAEAINVEGLSLDKFLEHQVANSGWAIEKSQGKGQLIVIPRNEFND 394
H++SL+Y KVPR+VLAEA+N++G SLDKF+E QV NSGW +EK G IV+P+NEFN
Sbjct: 146 HLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNH 202
Query: 393 PILKKNTADSVPLEHITRIFPIL 325
P LKKNT ++VPLEHI RIFPIL
Sbjct: 203 PELKKNTGENVPLEHIARIFPIL 225
>gb|AAM19805.1| AT4g33250/F17M5_10 [Arabidopsis thaliana]
Length = 61
Score = 86.3 bits (212), Expect = 3e-16
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = -2
Query: 513 VEGLSLDKFLEHQVANSGWAIEKSQGKGQLIVIPRNEFNDPILKKNTADSVPLEHITRIF 334
++G SLDKF+E QV NSGW +EK G IV+P+NEFN P LKKNT ++VPLEHI RIF
Sbjct: 1 MDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIF 57
Query: 333 PIL 325
PIL
Sbjct: 58 PIL 60
>ref|NP_704200.1| modification methylase-like protein, putative [Plasmodium
falciparum 3D7] gi|23498938|emb|CAD51016.1| modification
methylase-like protein, putative [Plasmodium falciparum
3D7]
Length = 706
Score = 36.6 bits (83), Expect = 0.23
Identities = 29/134 (21%), Positives = 57/134 (41%)
Frame = +1
Query: 25 YDILSLDNMAIAFRPTSQEYYRHYKEKRKSIQGINPQSITKHSKAI*FSAISTKHKSKVQ 204
+DI++++ + Y+ H+++K++++ I+P TKH A K
Sbjct: 442 FDIININKKTTTCCHVANYYHHHHQKKKENVNNISPDEPTKHMNA----------KGNYA 491
Query: 205 SLSTNSHIEASKGGDAAR*GQICINPPGKKTCSPP*KKLAKNREDASNVLQRYTIGCVFL 384
T+++ KG + + N C+ ++ KN+E +NVL + V
Sbjct: 492 MCFTSNYGRYIKGSGSI----LYYNRKENSNCA---EQKTKNKE--TNVLTKENNEYVHT 542
Query: 385 QNWVIKLISGDDNE 426
N+ IS DN+
Sbjct: 543 SNYTCNSISNSDND 556
>gb|AAH07335.1|AAH07335 Similar to muscle specific gene [Homo sapiens]
Length = 120
Score = 32.7 bits (73), Expect = 3.3
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = -2
Query: 573 HVISLTYXKVPRTVLAEAINVEGLSLDKFLEHQVANSGWAIEKSQGKGQLIVIPRNEFND 394
HV+ +TY + R +LAE + G D L+ ++ GW+ ++S GQ+ + + E
Sbjct: 46 HVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGWSADES---GQIFICSQEESIK 99
Query: 393 PILKKNTADSVPLEHITRI 337
P KN + + + ++ I
Sbjct: 100 P---KNIVEKIDFDSVSSI 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,257,434
Number of Sequences: 1393205
Number of extensions: 9476474
Number of successful extensions: 24031
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23989
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
