Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004052A_C01 KMC004052A_c01
(779 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176287.2| splicing factor U2AF 65 kDa subunit, putative; ... 99 7e-20
pir||E96634 probable U2 snRNP auxiliary factor T7P1.5 [imported]... 99 7e-20
emb|CAA77136.1| U2 snRNP auxiliary factor, large subunit [Nicoti... 98 2e-19
gb|AAL85029.1| putative splicing factor [Arabidopsis thaliana] 97 3e-19
ref|NP_195387.1| splicing factor U2AF 65 kDa subunit, putative; ... 97 3e-19
>ref|NP_176287.2| splicing factor U2AF 65 kDa subunit, putative; protein id:
At1g60900.1 [Arabidopsis thaliana]
Length = 589
Score = 99.0 bits (245), Expect = 7e-20
Identities = 50/69 (72%), Positives = 53/69 (76%)
Frame = -3
Query: 216 PPPPATDANSHATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCI 37
P P ATRHARRV V LPPTANEQSV+TFFSQVM+ IGGNTAGPGDAVVNV I
Sbjct: 239 PVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYI 298
Query: 36 NHDMNFAFV 10
NH+ FAFV
Sbjct: 299 NHEKKFAFV 307
>pir||E96634 probable U2 snRNP auxiliary factor T7P1.5 [imported] - Arabidopsis
thaliana gi|12323333|gb|AAG51641.1|AC018908_7 putative
U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis
thaliana]
Length = 568
Score = 99.0 bits (245), Expect = 7e-20
Identities = 50/69 (72%), Positives = 53/69 (76%)
Frame = -3
Query: 216 PPPPATDANSHATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCI 37
P P ATRHARRV V LPPTANEQSV+TFFSQVM+ IGGNTAGPGDAVVNV I
Sbjct: 218 PVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYI 277
Query: 36 NHDMNFAFV 10
NH+ FAFV
Sbjct: 278 NHEKKFAFV 286
>emb|CAA77136.1| U2 snRNP auxiliary factor, large subunit [Nicotiana
plumbaginifolia]
Length = 555
Score = 97.8 bits (242), Expect = 2e-19
Identities = 54/82 (65%), Positives = 55/82 (66%), Gaps = 4/82 (4%)
Frame = -3
Query: 243 NSHPHADSS----PPPPATDANSHATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGN 76
N P A S P P ATRHARRV V LPPTANEQSVATFFS VM IGGN
Sbjct: 192 NMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGN 251
Query: 75 TAGPGDAVVNVCINHDMNFAFV 10
TAGPGDAVVNV INH+ FAFV
Sbjct: 252 TAGPGDAVVNVYINHEKKFAFV 273
>gb|AAL85029.1| putative splicing factor [Arabidopsis thaliana]
Length = 542
Score = 96.7 bits (239), Expect = 3e-19
Identities = 49/66 (74%), Positives = 51/66 (77%)
Frame = -3
Query: 207 PATDANSHATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHD 28
P ATRHARRV V L PTANEQSVATFFSQVMA +GGNTAGPGDAVVNV INH+
Sbjct: 226 PIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHE 285
Query: 27 MNFAFV 10
FAFV
Sbjct: 286 KKFAFV 291
>ref|NP_195387.1| splicing factor U2AF 65 kDa subunit, putative; protein id:
At4g36690.1, supported by cDNA: gi_18087530 [Arabidopsis
thaliana] gi|25407754|pir||C85433 splicing factor-like
protein [imported] - Arabidopsis thaliana
gi|4006898|emb|CAB16828.1| splicing factor-like protein
[Arabidopsis thaliana] gi|7270617|emb|CAB80335.1|
splicing factor-like protein [Arabidopsis thaliana]
gi|18087531|gb|AAL58899.1|AF462805_1 At4g35590/C7A10_670
[Arabidopsis thaliana] gi|23506119|gb|AAN28919.1|
At4g35590/C7A10_670 [Arabidopsis thaliana]
gi|24030414|gb|AAN41365.1| putative splicing factor
[Arabidopsis thaliana]
Length = 573
Score = 96.7 bits (239), Expect = 3e-19
Identities = 49/66 (74%), Positives = 51/66 (77%)
Frame = -3
Query: 207 PATDANSHATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHD 28
P ATRHARRV V L PTANEQSVATFFSQVMA +GGNTAGPGDAVVNV INH+
Sbjct: 226 PIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHE 285
Query: 27 MNFAFV 10
FAFV
Sbjct: 286 KKFAFV 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 704,230,775
Number of Sequences: 1393205
Number of extensions: 16505942
Number of successful extensions: 59202
Number of sequences better than 10.0: 296
Number of HSP's better than 10.0 without gapping: 50970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58600
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
