Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004050A_C01 KMC004050A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB85628.1| putative ripening-related protein [Vitis vinifera] 275 6e-73
ref|NP_195843.1| putative protein; protein id: At5g02230.1, supp... 215 4e-55
gb|AAM65114.1| unknown [Arabidopsis thaliana] 215 4e-55
ref|NP_200756.1| putative ripening-related protein - like; prote... 183 2e-45
gb|AAM67205.1| putative ripening-related protein-like [Arabidops... 179 3e-44
>emb|CAB85628.1| putative ripening-related protein [Vitis vinifera]
Length = 301
Score = 275 bits (702), Expect = 6e-73
Identities = 138/181 (76%), Positives = 154/181 (84%), Gaps = 2/181 (1%)
Frame = -2
Query: 701 NGDKVHAVKVLSRLGLEDCFEGIICFETLNPIHKSSVSDDEDDIEF--FGSRSTNPTTTT 528
N DKVHA K LSRLGLEDCFEG+ICFETLNP HKS+VSDDEDDI F + + TTTT
Sbjct: 121 NADKVHAAKALSRLGLEDCFEGVICFETLNPSHKSTVSDDEDDIAFVRLTANTATATTTT 180
Query: 527 SSSEIFDIIGHFAQPNPTAVLPKTPIICKPQEHAIELALKIANLNPQRTLFFEDSVRNIQ 348
SS+EIFDIIGHF+QPN LPKTPI+CKP E AIE AL+IAN+NPQRTLFFEDS RNIQ
Sbjct: 181 SSTEIFDIIGHFSQPNAGTALPKTPIVCKPSEAAIERALRIANINPQRTLFFEDSARNIQ 240
Query: 347 AGKRVGLHTVLVGTSQRVKGADYALESIHNLREAVPELWEDHDIKKSEVAYPAGKIAVET 168
+GKRVGLHTVLVGTSQR+KGAD+ALESIHN+REA+PELWE KKSEV Y AG++AVET
Sbjct: 241 SGKRVGLHTVLVGTSQRIKGADFALESIHNMREALPELWEGD--KKSEVGY-AGQVAVET 297
Query: 167 P 165
P
Sbjct: 298 P 298
>ref|NP_195843.1| putative protein; protein id: At5g02230.1, supported by cDNA:
36724. [Arabidopsis thaliana] gi|11358409|pir||T48244
hypothetical protein T7H20.280 - Arabidopsis thaliana
gi|7340697|emb|CAB82996.1| putative protein [Arabidopsis
thaliana]
Length = 280
Score = 215 bits (548), Expect = 4e-55
Identities = 109/178 (61%), Positives = 133/178 (74%)
Frame = -2
Query: 701 NGDKVHAVKVLSRLGLEDCFEGIICFETLNPIHKSSVSDDEDDIEFFGSRSTNPTTTTSS 522
N D+VHA K L +LGLEDCFEGIICFETLN +H ++ S++
Sbjct: 121 NADRVHAAKALKKLGLEDCFEGIICFETLNLMHTNAASNN-------------------- 160
Query: 521 SEIFDIIGHFAQPNPTAVLPKTPIICKPQEHAIELALKIANLNPQRTLFFEDSVRNIQAG 342
SEIFDI+GHF + P LPKTP++CKP E AIE AL+IAN++P RTLFFEDSVRN+QAG
Sbjct: 161 SEIFDIVGHFNRSEPVGSLPKTPVVCKPSESAIEKALEIANIDPNRTLFFEDSVRNVQAG 220
Query: 341 KRVGLHTVLVGTSQRVKGADYALESIHNLREAVPELWEDHDIKKSEVAYPAGKIAVET 168
KRVGL+TVLVG S +VKGADYALE+IHN++EA+PELWE D K S+V Y +GK+AVET
Sbjct: 221 KRVGLYTVLVGKSTKVKGADYALENIHNMKEAIPELWES-DRKSSDVGY-SGKVAVET 276
>gb|AAM65114.1| unknown [Arabidopsis thaliana]
Length = 280
Score = 215 bits (548), Expect = 4e-55
Identities = 109/178 (61%), Positives = 133/178 (74%)
Frame = -2
Query: 701 NGDKVHAVKVLSRLGLEDCFEGIICFETLNPIHKSSVSDDEDDIEFFGSRSTNPTTTTSS 522
N D+VHA K L +LGLEDCFEGIICFETLN +H ++ S++
Sbjct: 121 NADRVHAAKALKKLGLEDCFEGIICFETLNLMHTNAASNN-------------------- 160
Query: 521 SEIFDIIGHFAQPNPTAVLPKTPIICKPQEHAIELALKIANLNPQRTLFFEDSVRNIQAG 342
SEIFDI+GHF + P LPKTP++CKP E AIE AL+IAN++P RTLFFEDSVRN+QAG
Sbjct: 161 SEIFDIVGHFNRSEPVGSLPKTPVVCKPSESAIEKALEIANIDPNRTLFFEDSVRNVQAG 220
Query: 341 KRVGLHTVLVGTSQRVKGADYALESIHNLREAVPELWEDHDIKKSEVAYPAGKIAVET 168
KRVGL+TVLVG S +VKGADYALE+IHN++EA+PELWE D K S+V Y +GK+AVET
Sbjct: 221 KRVGLYTVLVGKSTKVKGADYALENIHNMKEAIPELWES-DRKSSDVGY-SGKVAVET 276
>ref|NP_200756.1| putative ripening-related protein - like; protein id: At5g59480.1,
supported by cDNA: 99078., supported by cDNA:
gi_17979376, supported by cDNA: gi_20465780 [Arabidopsis
thaliana] gi|8885553|dbj|BAA97483.1| ripening-related
protein-like; hydrolase-like [Arabidopsis thaliana]
gi|17979377|gb|AAL49914.1| putative ripening-related
protein [Arabidopsis thaliana]
gi|20465781|gb|AAM20379.1| putative ripening protein
[Arabidopsis thaliana]
Length = 282
Score = 183 bits (464), Expect = 2e-45
Identities = 94/178 (52%), Positives = 117/178 (64%)
Frame = -2
Query: 701 NGDKVHAVKVLSRLGLEDCFEGIICFETLNPIHKSSVSDDEDDIEFFGSRSTNPTTTTSS 522
N DK HA K+++RLGLE CFE II FETLNPI K T T +
Sbjct: 121 NADKAHAAKIIARLGLEGCFEKIISFETLNPITK-----------------TESPVDTKT 163
Query: 521 SEIFDIIGHFAQPNPTAVLPKTPIICKPQEHAIELALKIANLNPQRTLFFEDSVRNIQAG 342
EIFDII + A P+ + LPKT ++CKP E A E K+AN+NP++TLFF+DS+RNIQ G
Sbjct: 164 REIFDIISYMANPDSSIELPKTSVVCKPSEGAFEQVFKMANINPKKTLFFDDSIRNIQTG 223
Query: 341 KRVGLHTVLVGTSQRVKGADYALESIHNLREAVPELWEDHDIKKSEVAYPAGKIAVET 168
KRVGLHTV VGTS R +G D ALE IHN+REA+P+LW+ D K E+ K+A+ET
Sbjct: 224 KRVGLHTVWVGTSHREEGVDIALEHIHNIREALPQLWDAVDDKAKEIR-TRQKVAIET 280
>gb|AAM67205.1| putative ripening-related protein-like [Arabidopsis thaliana]
Length = 282
Score = 179 bits (454), Expect = 3e-44
Identities = 93/178 (52%), Positives = 116/178 (64%)
Frame = -2
Query: 701 NGDKVHAVKVLSRLGLEDCFEGIICFETLNPIHKSSVSDDEDDIEFFGSRSTNPTTTTSS 522
N DK HA K+++RLGLE CFE II FETLNPI K T T +
Sbjct: 121 NADKAHAAKIIARLGLEGCFEKIISFETLNPITK-----------------TESPVDTKT 163
Query: 521 SEIFDIIGHFAQPNPTAVLPKTPIICKPQEHAIELALKIANLNPQRTLFFEDSVRNIQAG 342
EIFDII + A P+ + LPKT ++CKP E A E K+AN+NP++TLFF+DS+RNIQ G
Sbjct: 164 REIFDIISYMANPDSSIELPKTSVVCKPSEGAFEQVFKMANINPKKTLFFDDSIRNIQTG 223
Query: 341 KRVGLHTVLVGTSQRVKGADYALESIHNLREAVPELWEDHDIKKSEVAYPAGKIAVET 168
KRVGLHTV VGTS R +G D ALE IHN+REA+ +LW+ D K E+ K+A+ET
Sbjct: 224 KRVGLHTVWVGTSHREEGVDIALEHIHNIREALLQLWDAVDDKAEEIR-TRQKVAIET 280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,058,588
Number of Sequences: 1393205
Number of extensions: 12433615
Number of successful extensions: 37390
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 35289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37229
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
