Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004045A_C01 KMC004045A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201355.1| unknown protein; protein id: At5g65520.1 [Arabi... 50 2e-05
ref|NP_441087.1| unknown protein [Synechocystis sp. PCC 6803] gi... 49 3e-05
ref|ZP_00073700.1| hypothetical protein [Trichodesmium erythraeu... 47 2e-04
ref|NP_189083.1| protein kinase, putative; protein id: At3g24400... 47 2e-04
ref|NP_104297.1| O-linked GlcNAc transferase [Mesorhizobium loti... 46 4e-04
>ref|NP_201355.1| unknown protein; protein id: At5g65520.1 [Arabidopsis thaliana]
gi|26453066|dbj|BAC43609.1| unknown protein [Arabidopsis
thaliana] gi|28973455|gb|AAO64052.1| unknown protein
[Arabidopsis thaliana]
Length = 206
Score = 50.1 bits (118), Expect = 2e-05
Identities = 25/60 (41%), Positives = 42/60 (69%), Gaps = 2/60 (3%)
Frame = -2
Query: 574 LATSQRGKVDPALADLTESVKLSPRN--VKAWSLLGECYEGKKMEEEAKKAYQEALQLEP 401
LA ++R ++D A+ DL E+V+L+ + + LLGECYE K ++E+A+ A+ EAL+ +P
Sbjct: 141 LAVNRRRRIDSAVEDLEEAVRLAAGTDTARLFRLLGECYEFKGLKEKAQWAFNEALKAQP 200
>ref|NP_441087.1| unknown protein [Synechocystis sp. PCC 6803] gi|7459499|pir||S74806
hypothetical protein sll1628 - Synechocystis sp. (strain
PCC 6803) gi|1652849|dbj|BAA17767.1|
ORF_ID:sll1628~unknown protein [Synechocystis sp. PCC
6803]
Length = 384
Score = 49.3 bits (116), Expect = 3e-05
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = -2
Query: 556 GKVDPALADLTESVKLSPRNVKAWSLLGECYEGKKMEEEAKKAYQEALQLEPELSAAQEA 377
GK++ ALA+ E++ +P + + W G E + +EEA +Y++AL LEP L AQE
Sbjct: 314 GKLEEALANFDEALAQNPDDAEVWLSRGLLLEAMERKEEAIPSYEKALTLEPTLPEAQER 373
Query: 376 LKRLSSASS 350
L+ L S
Sbjct: 374 LEELQGLLS 382
>ref|ZP_00073700.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 486
Score = 46.6 bits (109), Expect = 2e-04
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = -2
Query: 574 LATSQRGKVDPALADLTESVKLSPRNVKAWSLLGECYEGKKMEEEAKKAYQEALQLEPEL 395
LATS+R D A+A +++KL+P + + LG ++EEA + ++A+QL+P+L
Sbjct: 414 LATSERW--DEAVAPYRQAIKLNPNSGVVYYHLGIALSYLGLDEEAISSLEKAIQLKPDL 471
Query: 394 SAAQEALKRLSSAS 353
S+A +AL++L S
Sbjct: 472 SSAHQALEKLQVKS 485
>ref|NP_189083.1| protein kinase, putative; protein id: At3g24400.1 [Arabidopsis
thaliana]
Length = 694
Score = 46.6 bits (109), Expect = 2e-04
Identities = 26/58 (44%), Positives = 31/58 (52%)
Frame = +1
Query: 382 PEQQKAPAPTATPPGTPSSPPPPSSSLHSTPLTNSKPSRSSD*VSPTRSNPPAPGQPS 555
P P+P P TP SPPPPS S+ S PLT S P S + P+ PP+P PS
Sbjct: 115 PSPPLTPSPLPPSPTTP-SPPPPSPSIPSPPLTPSPPPSSP--LRPSSPPPPSPATPS 169
Score = 40.8 bits (94), Expect = 0.012
Identities = 24/62 (38%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Frame = +1
Query: 376 ALPEQQKAPAPTATPPGTPSSPPPPSSSLHSTPLTNSKPSRSSD*VSPT--RSNPPAPGQ 549
++P P+P + P PSSPPPPS + STP S P S+ P +PP P
Sbjct: 139 SIPSPPLTPSPPPSSPLRPSSPPPPSPATPSTP-PRSPPPPSTPTPPPRVGSLSPPPPAS 197
Query: 550 PS 555
PS
Sbjct: 198 PS 199
Score = 37.4 bits (85), Expect = 0.14
Identities = 27/67 (40%), Positives = 29/67 (42%), Gaps = 5/67 (7%)
Frame = +1
Query: 376 ALPEQQKAPAPTAT----PPGTPSSPPP-PSSSLHSTPLTNSKPSRSSD*VSPTRSNPPA 540
ALP P P T PP TPS PPP S L +P T S P SPT +PP
Sbjct: 50 ALPPALPPPPPPTTVPPIPPSTPSPPPPLTPSPLPPSPTTPSPPLTP----SPTTPSPPL 105
Query: 541 PGQPSRA 561
P A
Sbjct: 106 TPSPPPA 112
Score = 37.4 bits (85), Expect = 0.14
Identities = 25/70 (35%), Positives = 33/70 (46%), Gaps = 6/70 (8%)
Frame = +1
Query: 364 STV*ALPEQQKAPAPTATP------PGTPSSPPPPSSSLHSTPLTNSKPSRSSD*VSPTR 525
+TV +P +P P TP P TPS P PS + S PLT S P ++P+
Sbjct: 62 TTVPPIPPSTPSPPPPLTPSPLPPSPTTPSPPLTPSPTTPSPPLTPSPPPA----ITPSP 117
Query: 526 SNPPAPGQPS 555
P+P PS
Sbjct: 118 PLTPSPLPPS 127
Score = 36.6 bits (83), Expect = 0.23
Identities = 24/69 (34%), Positives = 30/69 (42%), Gaps = 11/69 (15%)
Frame = +1
Query: 382 PEQQKAPAPTATPPGTPSSPP-------PPSSSLHSTPLTNS----KPSRSSD*VSPTRS 528
P P PTA PP P PP PPS+ PLT S P+ S ++P+ +
Sbjct: 40 PALPPPPPPTALPPALPPPPPPTTVPPIPPSTPSPPPPLTPSPLPPSPTTPSPPLTPSPT 99
Query: 529 NPPAPGQPS 555
P P PS
Sbjct: 100 TPSPPLTPS 108
Score = 35.0 bits (79), Expect = 0.68
Identities = 20/52 (38%), Positives = 26/52 (49%)
Frame = +1
Query: 400 PAPTATPPGTPSSPPPPSSSLHSTPLTNSKPSRSSD*VSPTRSNPPAPGQPS 555
P PTA PP P PPPP ++L L P + + P+ +PP P PS
Sbjct: 33 PPPTALPPALP--PPPPPTAL-PPALPPPPPPTTVPPIPPSTPSPPPPLTPS 81
Score = 31.6 bits (70), Expect = 7.5
Identities = 18/54 (33%), Positives = 25/54 (45%)
Frame = +1
Query: 385 EQQKAPAPTATPPGTPSSPPPPSSSLHSTPLTNSKPSRSSD*VSPTRSNPPAPG 546
+ + PAP PP +PSS PP S+ + S SD + PP+PG
Sbjct: 257 DNEAPPAPIVPPPKSPSSAPPRPPHFMSSGSSGDYDSNYSD---QSVLPPPSPG 307
Score = 31.2 bits (69), Expect = 9.8
Identities = 25/69 (36%), Positives = 29/69 (41%), Gaps = 6/69 (8%)
Frame = +1
Query: 379 LPEQQKAPAPTATPPGTPSSP--P--PPSSSLHSTPLTNSKPSRSSD*VSPTRSNPP--A 540
LP P+P P PS P P PPSS L + P+ S +P RS PP
Sbjct: 124 LPPSPTTPSPPPPSPSIPSPPLTPSPPPSSPLRPSSPPPPSPATPS---TPPRSPPPPST 180
Query: 541 PGQPSRADS 567
P P R S
Sbjct: 181 PTPPPRVGS 189
>ref|NP_104297.1| O-linked GlcNAc transferase [Mesorhizobium loti]
gi|14023477|dbj|BAB50083.1| O-linked GlcNAc transferase
[Mesorhizobium loti]
Length = 280
Score = 45.8 bits (107), Expect = 4e-04
Identities = 22/65 (33%), Positives = 38/65 (57%)
Frame = -2
Query: 556 GKVDPALADLTESVKLSPRNVKAWSLLGECYEGKKMEEEAKKAYQEALQLEPELSAAQEA 377
G D A +D ++KL +N +AW+ YE + + +A K+Y+EA++L P A++
Sbjct: 216 GDEDNAFSDFNMAIKLDGQNAEAWANQALIYERRGDKAKAAKSYKEAVRLNPNYQPAKDG 275
Query: 376 LKRLS 362
L R+S
Sbjct: 276 LARVS 280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,350,249
Number of Sequences: 1393205
Number of extensions: 10401150
Number of successful extensions: 155126
Number of sequences better than 10.0: 2643
Number of HSP's better than 10.0 without gapping: 76465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126071
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
