Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004044A_C01 KMC004044A_c01
(408 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_221920.1| similar to RB-associated KRAB repressor [Homo s... 33 1.1
gb|AAK82568.1| cytochrome c oxidase subunit II [Bubas bubalus] 32 1.4
gb|AAK82572.1| cytochrome c oxidase subunit II [Onitis ion] 32 1.9
gb|AAK82570.1| cytochrome c oxidase subunit II [Bubas bison] 32 1.9
ref|NP_656613.1| hypothetical protein predicted by GeneMark [Bac... 32 2.5
>ref|XP_221920.1| similar to RB-associated KRAB repressor [Homo sapiens] [Rattus
norvegicus]
Length = 831
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 163 PRKKKTGKDKACRKLVEDLSCYKVHQRG 246
P +KT + C K+ DLSCY VH RG
Sbjct: 650 PEGEKTYECNICGKVFSDLSCYTVHYRG 677
>gb|AAK82568.1| cytochrome c oxidase subunit II [Bubas bubalus]
Length = 194
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 10/82 (12%)
Frame = -3
Query: 385 WKTWSIQ*-----WHRSNIR*NYWMRTSFVIITVVGYQCYSKFGTIYQHHAILADELCSM 221
WK +S+Q + N N+ M T VI T+VGY S F Y + +L + +
Sbjct: 4 WKMYSLQDAASPLMEQLNFFHNHAMLTLIVIATIVGYMMSSLFNNTYNYRYLLEGQTIEI 63
Query: 220 I-----SLLLVFCRLYLFQFSF 170
+ +++L+F L Q +
Sbjct: 64 VWTITPAIMLIFIALPSLQLLY 85
>gb|AAK82572.1| cytochrome c oxidase subunit II [Onitis ion]
Length = 194
Score = 32.0 bits (71), Expect = 1.9
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 10/82 (12%)
Frame = -3
Query: 385 WKTWSIQ*-----WHRSNIR*NYWMRTSFVIITVVGYQCYSKFGTIYQHHAILADELCSM 221
WK +S+Q + N N+ M T VI T+VGY S F Y + +L + +
Sbjct: 4 WKMYSLQDAASPLMEQLNFFHNHAMLTLVVIATIVGYMMSSLFNNTYNYRYLLEGQTIEI 63
Query: 220 I-----SLLLVFCRLYLFQFSF 170
+ +++L+F L Q +
Sbjct: 64 VWTITPAIMLIFIALPSLQLLY 85
>gb|AAK82570.1| cytochrome c oxidase subunit II [Bubas bison]
Length = 194
Score = 32.0 bits (71), Expect = 1.9
Identities = 21/82 (25%), Positives = 37/82 (44%), Gaps = 10/82 (12%)
Frame = -3
Query: 385 WKTWSIQ*-----WHRSNIR*NYWMRTSFVIITVVGYQCYSKFGTIYQHHAILADELCSM 221
WK +S+Q + N N+ M T +I T+VGY S F Y + +L + +
Sbjct: 4 WKMYSLQDAASPLMEQLNFFHNHAMLTLIIIATIVGYMMSSLFNNTYNYRYLLEGQTIEI 63
Query: 220 I-----SLLLVFCRLYLFQFSF 170
+ +++L+F L Q +
Sbjct: 64 VWTITPAIMLIFIALPSLQLLY 85
>ref|NP_656613.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 250
Score = 31.6 bits (70), Expect = 2.5
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 32 KKSNIHEINAHIKMIWSTFQTQFYQTNSNKTLNQTLQRKKSRYHPGKRKLEK 187
K I EIN ++ W TF + + TN+ + NQT++RK+ + +K ++
Sbjct: 57 KLHEIPEINIDVEKAWQTFNS-YNHTNNVFSTNQTIERKQGVFSNMNKKSKR 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,203,408
Number of Sequences: 1393205
Number of extensions: 6370768
Number of successful extensions: 15387
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15377
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
