Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004043A_C01 KMC004043A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF37219.1|AF213984_1 ribosome inactivating protein RIPt [Pol... 36 0.32
gb|AAC49754.1| Neu5Ac alpha-2,6-gal/galNAc-binding type 2 riboso... 33 2.7
>gb|AAF37219.1|AF213984_1 ribosome inactivating protein RIPt [Polygonatum multiflorum]
Length = 603
Score = 36.2 bits (82), Expect = 0.32
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 413 CLEPRSEDSKHGYPVEASSCSVYLNVHWSLMLPGSIVLFIKIQS*NGLHP 264
C++ R+E + G P++ C N W+ G+I K + NG HP
Sbjct: 351 CMDVRNESNNDGIPIQLWPCGAQRNQQWTFHTDGTIQSMGKCMTSNGYHP 400
>gb|AAC49754.1| Neu5Ac alpha-2,6-gal/galNAc-binding type 2 ribosome-inactivating
protein precusor [Sambucus nigra]
Length = 569
Score = 33.1 bits (74), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = -3
Query: 413 CLEPRSEDSKHGYPVEASSCSVYLNVHWSLMLPGSI 306
C E ++ D K G PV+ SSC N W+ G+I
Sbjct: 328 CAEVKNGDEKDGTPVQLSSCGEQSNQQWTFSTDGTI 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,528,758
Number of Sequences: 1393205
Number of extensions: 10632424
Number of successful extensions: 24657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24654
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
