Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004042A_C01 KMC004042A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK59642.2| unknown protein [Arabidopsis thaliana] 72 3e-12
gb|AAN41290.1| unknown protein [Arabidopsis thaliana] 72 3e-12
ref|NP_566725.2| expressed protein; protein id: At3g23300.1 [Ara... 72 3e-12
ref|NP_563706.1| ankyrin-like protein; protein id: At1g04430.1, ... 72 4e-12
gb|AAK62456.1|AF387011_1 Unknown protein [Arabidopsis thaliana] ... 72 4e-12
>gb|AAK59642.2| unknown protein [Arabidopsis thaliana]
Length = 314
Score = 72.4 bits (176), Expect = 3e-12
Identities = 34/62 (54%), Positives = 46/62 (73%)
Frame = -2
Query: 542 GFVIVHDKRSVVLSIKKFLPALHWQAVAKFNVEEGSGQDEDDAVLIIQKKIWLTSESIRA 363
GF+++ DK+SVV +KK+L ALHW+AV E S QD D+ +LI+QKK+WLTSES+R
Sbjct: 254 GFILIRDKQSVVDLVKKYLKALHWEAVETKTASE-SDQDSDNVILIVQKKLWLTSESLRD 312
Query: 362 AE 357
E
Sbjct: 313 LE 314
>gb|AAN41290.1| unknown protein [Arabidopsis thaliana]
Length = 376
Score = 72.4 bits (176), Expect = 3e-12
Identities = 34/62 (54%), Positives = 46/62 (73%)
Frame = -2
Query: 542 GFVIVHDKRSVVLSIKKFLPALHWQAVAKFNVEEGSGQDEDDAVLIIQKKIWLTSESIRA 363
GF+++ DK+SVV +KK+L ALHW+AV E S QD D+ +LI+QKK+WLTSES+R
Sbjct: 316 GFILIRDKQSVVDLVKKYLKALHWEAVETKTASE-SDQDSDNVILIVQKKLWLTSESLRD 374
Query: 362 AE 357
E
Sbjct: 375 LE 376
>ref|NP_566725.2| expressed protein; protein id: At3g23300.1 [Arabidopsis thaliana]
gi|11994314|dbj|BAB02273.1| ankyrin-like protein
[Arabidopsis thaliana]
Length = 611
Score = 72.4 bits (176), Expect = 3e-12
Identities = 34/62 (54%), Positives = 46/62 (73%)
Frame = -2
Query: 542 GFVIVHDKRSVVLSIKKFLPALHWQAVAKFNVEEGSGQDEDDAVLIIQKKIWLTSESIRA 363
GF+++ DK+SVV +KK+L ALHW+AV E S QD D+ +LI+QKK+WLTSES+R
Sbjct: 551 GFILIRDKQSVVDLVKKYLKALHWEAVETKTASE-SDQDSDNVILIVQKKLWLTSESLRD 609
Query: 362 AE 357
E
Sbjct: 610 LE 611
>ref|NP_563706.1| ankyrin-like protein; protein id: At1g04430.1, supported by cDNA:
108617., supported by cDNA: gi_14423547, supported by
cDNA: gi_15450899, supported by cDNA: gi_17978686,
supported by cDNA: gi_20148262 [Arabidopsis thaliana]
gi|15450900|gb|AAK96721.1| Unknown protein [Arabidopsis
thaliana] gi|17978687|gb|AAL47337.1| unknown protein
[Arabidopsis thaliana]
Length = 623
Score = 72.0 bits (175), Expect = 4e-12
Identities = 37/68 (54%), Positives = 47/68 (68%), Gaps = 6/68 (8%)
Frame = -2
Query: 542 GFVIVHDKRSVVLSIKKFLPALHWQAVAKFNVEEGSGQDED------DAVLIIQKKIWLT 381
GFVI+ DK+SVV SIKK+L ALHW+ VA V S D+D + V I+QKK+WLT
Sbjct: 556 GFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGENNVVFIVQKKLWLT 615
Query: 380 SESIRAAE 357
SES+R +E
Sbjct: 616 SESLRDSE 623
>gb|AAK62456.1|AF387011_1 Unknown protein [Arabidopsis thaliana] gi|20148263|gb|AAM10022.1|
unknown protein [Arabidopsis thaliana]
Length = 623
Score = 72.0 bits (175), Expect = 4e-12
Identities = 37/68 (54%), Positives = 47/68 (68%), Gaps = 6/68 (8%)
Frame = -2
Query: 542 GFVIVHDKRSVVLSIKKFLPALHWQAVAKFNVEEGSGQDED------DAVLIIQKKIWLT 381
GFVI+ DK+SVV SIKK+L ALHW+ VA V S D+D + V I+QKK+WLT
Sbjct: 556 GFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGENNVVFIVQKKLWLT 615
Query: 380 SESIRAAE 357
SES+R +E
Sbjct: 616 SESLRDSE 623
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,037,761
Number of Sequences: 1393205
Number of extensions: 11191262
Number of successful extensions: 101840
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 45189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86987
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
