Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004040A_C01 KMC004040A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567185.1| F-box protein family; protein id: At4g00755.1, ... 72 9e-12
gb|AAO41965.1| putative F-box protein [Arabidopsis thaliana] 72 9e-12
gb|AAL67875.1| unknown protein [Oryza sativa] 48 1e-04
pir||T01571 hypothetical protein A_TM018A10.10 - Arabidopsis tha... 47 2e-04
gb|EAA12423.1| ebiP6697 [Anopheles gambiae str. PEST] 34 1.5
>ref|NP_567185.1| F-box protein family; protein id: At4g00755.1, supported by cDNA:
111069. [Arabidopsis thaliana]
gi|21536774|gb|AAM61106.1| unknown [Arabidopsis
thaliana]
Length = 377
Score = 71.6 bits (174), Expect = 9e-12
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Frame = -2
Query: 654 ELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEPSGMFVLKCDRNYQPPATSEE 475
E LGRVQ QEMDG YIC+SHV+ G L+ +F V+ ++ +G F LK +Y P EE
Sbjct: 262 EFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVDDNGKFGLKV-LSYNDPKKMEE 320
Query: 474 ---ESGAN-STDYMQRGLRDFQQIVTILRGHVIGVVEDDW-DEEEYEADDFEEE 328
E+G + + Q LR+ +Q++ +L H + VV+ W DE + E + E+E
Sbjct: 321 MDAEAGQDMDAEAGQSQLRNLEQLLNLLHRHPLDVVDYVWPDESDDEYAESEDE 374
>gb|AAO41965.1| putative F-box protein [Arabidopsis thaliana]
Length = 245
Score = 71.6 bits (174), Expect = 9e-12
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Frame = -2
Query: 654 ELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEPSGMFVLKCDRNYQPPATSEE 475
E LGRVQ QEMDG YIC+SHV+ G L+ +F V+ ++ +G F LK +Y P EE
Sbjct: 130 EFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVDDNGKFGLKV-LSYNDPKKMEE 188
Query: 474 ---ESGAN-STDYMQRGLRDFQQIVTILRGHVIGVVEDDW-DEEEYEADDFEEE 328
E+G + + Q LR+ +Q++ +L H + VV+ W DE + E + E+E
Sbjct: 189 MDAEAGQDMDAEAGQSQLRNLEQLLNLLHRHPLDVVDYVWPDESDDEYAESEDE 242
>gb|AAL67875.1| unknown protein [Oryza sativa]
Length = 76
Score = 48.1 bits (113), Expect = 1e-04
Identities = 24/36 (66%), Positives = 25/36 (68%)
Frame = -2
Query: 654 ELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVD 547
E LGRVQ+QEMD L YICISHVQ VG L VD
Sbjct: 32 EFLGRVQKQEMDDLYYICISHVQIVGIPLPRELGVD 67
>pir||T01571 hypothetical protein A_TM018A10.10 - Arabidopsis thaliana
gi|2252871|gb|AAB62869.1| A_TM018A10.10 gene product
[Arabidopsis thaliana]
Length = 357
Score = 47.4 bits (111), Expect = 2e-04
Identities = 32/97 (32%), Positives = 54/97 (54%), Gaps = 5/97 (5%)
Frame = -2
Query: 603 CISHVQAVGSLLSPAFSVDILEPSGMFVLKCDRNYQPPATSEE---ESGAN-STDYMQRG 436
C+SHV+ G L+ +F V+ ++ +G F LK +Y P EE E+G + + Q
Sbjct: 259 CVSHVKVEGRSLAKSFRVENVDDNGKFGLKV-LSYNDPKKMEEMDAEAGQDMDAEAGQSQ 317
Query: 435 LRDFQQIVTILRGHVIGVVEDDW-DEEEYEADDFEEE 328
LR+ +Q++ +L H + VV+ W DE + E + E+E
Sbjct: 318 LRNLEQLLNLLHRHPLDVVDYVWPDESDDEYAESEDE 354
>gb|EAA12423.1| ebiP6697 [Anopheles gambiae str. PEST]
Length = 1219
Score = 34.3 bits (77), Expect = 1.5
Identities = 29/71 (40%), Positives = 36/71 (49%), Gaps = 13/71 (18%)
Frame = -2
Query: 495 PPATSEE--ESGANSTDYMQRGLRDFQQIVTILRGHVIGVVED-----------DWDEEE 355
PP S E SG +S R+ QQI++ +G VI +VED D+DEEE
Sbjct: 622 PPMPSAEMLASGGSSPS------REVQQIMST-KGPVISMVEDLFLYSCVERKDDYDEEE 674
Query: 354 YEADDFEEEYA 322
E DD EEE A
Sbjct: 675 EEEDDEEEEKA 685
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,916,170
Number of Sequences: 1393205
Number of extensions: 12886858
Number of successful extensions: 59483
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 37703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50226
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
