Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004039A_C01 KMC004039A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566623.1| expressed protein; protein id: At3g19000.1, sup... 133 9e-31
ref|NP_566624.1| expressed protein; protein id: At3g19010.1, sup... 131 4e-30
gb|AAM65669.1| unknown [Arabidopsis thaliana] 130 8e-30
gb|AAM61665.1| leucoanthocyanidin dioxygenase-like protein [Arab... 84 8e-16
ref|NP_196179.1| leucoanthocyanidin dioxygenase-like protein; pr... 84 8e-16
>ref|NP_566623.1| expressed protein; protein id: At3g19000.1, supported by cDNA:
36985., supported by cDNA: gi_20466683 [Arabidopsis
thaliana] gi|9280317|dbj|BAB01696.1| oxylase-like
protein [Arabidopsis thaliana]
gi|20466684|gb|AAM20659.1| unknown protein [Arabidopsis
thaliana] gi|23198196|gb|AAN15625.1| unknown protein
[Arabidopsis thaliana]
Length = 352
Score = 133 bits (335), Expect = 9e-31
Identities = 57/100 (57%), Positives = 78/100 (78%)
Frame = -3
Query: 488 VEPTPDAYIINVGDITQVWSNDAYESVEHRVMVNSEKERYSIPYFFFPAHDTEVKPLEKL 309
V+P DA IIN+G+ QVW+ND Y S EHRV+VN+ KER+SIP+FFFP+H+ ++PLE+L
Sbjct: 252 VKPISDALIINMGNCIQVWTNDEYWSAEHRVVVNTSKERFSIPFFFFPSHEANIEPLEEL 311
Query: 308 INEQNPAKYRPYKWGKFLIHRKNSNFEKQNVENLQIYHYK 189
I+E+NP Y+ Y WGKF + R S+F+K VEN+QI H+K
Sbjct: 312 ISEENPPCYKKYNWGKFFVSRNRSDFKKLEVENIQIDHFK 351
>ref|NP_566624.1| expressed protein; protein id: At3g19010.1, supported by cDNA:
41506. [Arabidopsis thaliana] gi|9280318|dbj|BAB01697.1|
oxidase-like protein [Arabidopsis thaliana]
gi|27754245|gb|AAO22576.1| unknown protein [Arabidopsis
thaliana]
Length = 349
Score = 131 bits (330), Expect = 4e-30
Identities = 53/101 (52%), Positives = 77/101 (75%)
Frame = -3
Query: 488 VEPTPDAYIINVGDITQVWSNDAYESVEHRVMVNSEKERYSIPYFFFPAHDTEVKPLEKL 309
+ P P+A +IN+G+ ++W+ND Y S EHRV+VN+ +ERYSIP+F P+HD EVKPLE+L
Sbjct: 247 IRPVPNALVINIGNCMEIWTNDKYWSAEHRVVVNTTRERYSIPFFLLPSHDVEVKPLEEL 306
Query: 308 INEQNPAKYRPYKWGKFLIHRKNSNFEKQNVENLQIYHYKL 186
++ +NP KY+ YKWGKF + R S+F K +EN+QI +K+
Sbjct: 307 VSPENPPKYKGYKWGKFYVSRNRSDFRKLEIENIQIDDFKV 347
>gb|AAM65669.1| unknown [Arabidopsis thaliana]
Length = 349
Score = 130 bits (327), Expect = 8e-30
Identities = 52/101 (51%), Positives = 77/101 (75%)
Frame = -3
Query: 488 VEPTPDAYIINVGDITQVWSNDAYESVEHRVMVNSEKERYSIPYFFFPAHDTEVKPLEKL 309
+ P P+A +IN+G+ ++W+ND Y S EHRV+VN+ +ERYSIP+F P+HD EVKPLE+L
Sbjct: 247 IRPVPNALVINIGNCMEIWTNDKYWSAEHRVVVNTTRERYSIPFFLLPSHDVEVKPLEEL 306
Query: 308 INEQNPAKYRPYKWGKFLIHRKNSNFEKQNVENLQIYHYKL 186
++ +NP +Y+ YKWGKF + R S+F K +EN+QI +K+
Sbjct: 307 VSPENPPRYKGYKWGKFYVSRNRSDFRKLEIENIQIDDFKV 347
>gb|AAM61665.1| leucoanthocyanidin dioxygenase-like protein [Arabidopsis thaliana]
Length = 355
Score = 84.0 bits (206), Expect = 8e-16
Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = -3
Query: 488 VEPTPDAYIINVGDITQVWSNDAYESVEHRVMVNSEKERYSIPYFFFPAHDTEVKPLEKL 309
V+P P A+I+N+GD Q+ SN Y+SVEHRV+VNS+KER S+ +F+ P D ++PL++L
Sbjct: 257 VKPHPHAFIVNIGDQIQILSNSTYKSVEHRVIVNSDKERVSLAFFYNPKSDIPIQPLQEL 316
Query: 308 INEQNPAKYRPYKWGKF-LIHRKNSNFEKQNVEN 210
++ NP Y P + ++ L R K +VE+
Sbjct: 317 VSTHNPPLYPPMTFDQYRLFIRTQGPQGKSHVES 350
>ref|NP_196179.1| leucoanthocyanidin dioxygenase-like protein; protein id:
At5g05600.1, supported by cDNA: 13012., supported by
cDNA: gi_14532537 [Arabidopsis thaliana]
gi|10178137|dbj|BAB11549.1| leucoanthocyanidin
dioxygenase-like protein [Arabidopsis thaliana]
gi|14532538|gb|AAK63997.1| AT5g05600/MOP10_14
[Arabidopsis thaliana] gi|22137300|gb|AAM91495.1|
AT5g05600/MOP10_14 [Arabidopsis thaliana]
Length = 371
Score = 84.0 bits (206), Expect = 8e-16
Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = -3
Query: 488 VEPTPDAYIINVGDITQVWSNDAYESVEHRVMVNSEKERYSIPYFFFPAHDTEVKPLEKL 309
V+P P A+I+N+GD Q+ SN Y+SVEHRV+VNS+KER S+ +F+ P D ++PL++L
Sbjct: 273 VKPHPHAFIVNIGDQIQILSNSTYKSVEHRVIVNSDKERVSLAFFYNPKSDIPIQPLQEL 332
Query: 308 INEQNPAKYRPYKWGKF-LIHRKNSNFEKQNVEN 210
++ NP Y P + ++ L R K +VE+
Sbjct: 333 VSTHNPPLYPPMTFDQYRLFIRTQGPQGKSHVES 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,499,181
Number of Sequences: 1393205
Number of extensions: 8440685
Number of successful extensions: 25148
Number of sequences better than 10.0: 615
Number of HSP's better than 10.0 without gapping: 24245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25014
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
