Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004038A_C01 KMC004038A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84883.1|AF402602_1 NAC domain protein NAC1 [Phaseolus vulg... 118 3e-26
pir||C96601 hypothetical protein T6H22.19 [imported] - Arabidops... 45 3e-04
ref|NP_175997.1| NAC1; protein id: At1g56010.1, supported by cDN... 45 3e-04
gb|AAO64808.1| At1g56010 [Arabidopsis thaliana] 45 3e-04
dbj|BAB02506.1| NAM (no apical meristem) protein-like [Arabidops... 39 0.032
>gb|AAK84883.1|AF402602_1 NAC domain protein NAC1 [Phaseolus vulgaris]
Length = 299
Score = 118 bits (296), Expect = 3e-26
Identities = 63/85 (74%), Positives = 68/85 (79%), Gaps = 8/85 (9%)
Frame = -1
Query: 494 PAANNNTT-------TTYGGGAPNLGYSLDPLSCESKVLKAVLSELTKMERNPLNPSL-G 339
P N+ TT TTYGG APNLGY LDPLSC+ KVLKAVLS++TKMERNPLN SL G
Sbjct: 216 PIFNHMTTMEPKLPATTYGG-APNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQSLKG 274
Query: 338 SPSLGEGSSESYLSEVGMPHLWNNY 264
S S GEGSSESYLSEVGMPH+WNNY
Sbjct: 275 STSFGEGSSESYLSEVGMPHMWNNY 299
>pir||C96601 hypothetical protein T6H22.19 [imported] - Arabidopsis thaliana
gi|6056383|gb|AAF02847.1|AC009894_18 Similar to NAM
protein [Arabidopsis thaliana]
Length = 309
Score = 45.4 bits (106), Expect = 3e-04
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -1
Query: 494 PAANNNTTTTYGGGAPNLGYSLDPLSCESKVLKAVLSELTKMERNPLNPSLGSPSLGEGS 315
P N N T G + L S + VL+A+LS+LTK++ + L P S S GEGS
Sbjct: 235 PCKNPNPLFTGGSASATLTGLDSFCSSDQMVLRALLSQLTKIDGS-LGPK-ESQSYGEGS 292
Query: 314 SESYLSEVGMPH-LWN 270
SES L+++G+P +WN
Sbjct: 293 SESLLTDIGIPSTVWN 308
>ref|NP_175997.1| NAC1; protein id: At1g56010.1, supported by cDNA: 205648.,
supported by cDNA: gi_6649235 [Arabidopsis thaliana]
gi|6649236|gb|AAF21437.1|AF198054_1 NAC1 [Arabidopsis
thaliana] gi|8778319|gb|AAF79328.1|AC002304_21 F14J16.32
[Arabidopsis thaliana] gi|21554126|gb|AAM63206.1| NAC1
[Arabidopsis thaliana]
Length = 324
Score = 45.4 bits (106), Expect = 3e-04
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -1
Query: 494 PAANNNTTTTYGGGAPNLGYSLDPLSCESKVLKAVLSELTKMERNPLNPSLGSPSLGEGS 315
P N N T G + L S + VL+A+LS+LTK++ + L P S S GEGS
Sbjct: 250 PCKNPNPLFTGGSASATLTGLDSFCSSDQMVLRALLSQLTKIDGS-LGPK-ESQSYGEGS 307
Query: 314 SESYLSEVGMPH-LWN 270
SES L+++G+P +WN
Sbjct: 308 SESLLTDIGIPSTVWN 323
>gb|AAO64808.1| At1g56010 [Arabidopsis thaliana]
Length = 257
Score = 45.4 bits (106), Expect = 3e-04
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -1
Query: 494 PAANNNTTTTYGGGAPNLGYSLDPLSCESKVLKAVLSELTKMERNPLNPSLGSPSLGEGS 315
P N N T G + L S + VL+A+LS+LTK++ + L P S S GEGS
Sbjct: 183 PCKNPNPLFTGGSASATLTGLDSFCSSDQMVLRALLSQLTKIDGS-LGPK-ESQSYGEGS 240
Query: 314 SESYLSEVGMPH-LWN 270
SES L+++G+P +WN
Sbjct: 241 SESLLTDIGIPSTVWN 256
>dbj|BAB02506.1| NAM (no apical meristem) protein-like [Arabidopsis thaliana]
Length = 279
Score = 38.9 bits (89), Expect = 0.032
Identities = 26/79 (32%), Positives = 41/79 (50%), Gaps = 4/79 (5%)
Frame = -1
Query: 494 PAANNNTTTTYGGGAPNLGYSLDPL---SCESKVLKAVLSELTKMERNPLNPSLGSPSLG 324
P +NN + + + + PL S + +L+ +LS+LTK S S G
Sbjct: 207 PCFSNNLSHNQTNQSGLISKNSSPLFNASPDQMILRTLLSQLTKKVEE-------SQSRG 259
Query: 323 EGSSESYLSEVGMP-HLWN 270
+GSSES L+++G+P H WN
Sbjct: 260 DGSSESQLTDIGIPSHAWN 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,398,552
Number of Sequences: 1393205
Number of extensions: 8972152
Number of successful extensions: 17596
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17594
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
