Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004037A_C01 KMC004037A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172113.1| Ring3-like bromodomain protein; protein id: At1... 58 1e-07
pir||T14462 non intermediate filament IFA binding protein - wild... 50 2e-05
gb|AAL07107.1| unknown protein [Arabidopsis thaliana] 50 2e-05
ref|NP_564037.1| expressed protein; protein id: At1g17790.1, sup... 50 2e-05
ref|ZP_00066022.1| hypothetical protein [Microbulbifer degradans... 48 8e-05
>ref|NP_172113.1| Ring3-like bromodomain protein; protein id: At1g06230.1
[Arabidopsis thaliana] gi|25406905|pir||A86198
hypothetical protein [imported] - Arabidopsis thaliana
gi|8844128|gb|AAF80220.1|AC025290_9 Contains similarity
to a Ring3 protein from Homo sapiens gi|133157 and
contains a bromodomain PF|00439. EST gb|F14211 comes
from this gene. [Arabidopsis thaliana]
Length = 766
Score = 57.8 bits (138), Expect = 1e-07
Identities = 38/81 (46%), Positives = 50/81 (60%), Gaps = 2/81 (2%)
Frame = +1
Query: 1 IEARARAEQTSNKKSL-APFV-EVQRETRAEERNVPPSLPVHGEIQVDNGSKTSSSSSSG 174
I+ARA AE+ S ++ AP E RE + P+ P+ +++ N + SSSSS
Sbjct: 685 IQARAEAERNSQQQMAPAPAAHEFSREGGNTAKKTLPT-PLPSQVEKQNNETSRSSSSSS 743
Query: 175 SDSGSSSSDSDSDSSSASGSD 237
S S SSSSDSDSDSSS+SGSD
Sbjct: 744 SSSSSSSSDSDSDSSSSSGSD 764
>pir||T14462 non intermediate filament IFA binding protein - wild cabbage
(fragment) gi|1313926|emb|CAA66267.1| non intermediate
filament IFA binding protein [Brassica oleracea]
Length = 165
Score = 50.4 bits (119), Expect = 2e-05
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +1
Query: 130 QVDNGSKTSSSSSSGSDSGSSSSDSDSDSSSASGSDVGS 246
Q +N +SSS+SS SD+GS SSDSDSDSSS GSD G+
Sbjct: 127 QKNNAGGSSSSNSSSSDTGSGSSDSDSDSSSGRGSDTGN 165
>gb|AAL07107.1| unknown protein [Arabidopsis thaliana]
Length = 487
Score = 50.4 bits (119), Expect = 2e-05
Identities = 26/39 (66%), Positives = 31/39 (78%)
Frame = +1
Query: 130 QVDNGSKTSSSSSSGSDSGSSSSDSDSDSSSASGSDVGS 246
Q +N S +SSS+SS SDSGS SSD+DSDSSS GSD G+
Sbjct: 449 QENNASGSSSSNSSSSDSGSCSSDTDSDSSSGRGSDNGN 487
>ref|NP_564037.1| expressed protein; protein id: At1g17790.1, supported by cDNA:
gi_15810438 [Arabidopsis thaliana]
gi|23297757|gb|AAN13019.1| unknown protein [Arabidopsis
thaliana]
Length = 487
Score = 50.4 bits (119), Expect = 2e-05
Identities = 26/39 (66%), Positives = 31/39 (78%)
Frame = +1
Query: 130 QVDNGSKTSSSSSSGSDSGSSSSDSDSDSSSASGSDVGS 246
Q +N S +SSS+SS SDSGS SSD+DSDSSS GSD G+
Sbjct: 449 QENNASGSSSSNSSSSDSGSCSSDTDSDSSSGRGSDNGN 487
>ref|ZP_00066022.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 667
Score = 48.1 bits (113), Expect = 8e-05
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +1
Query: 100 PPSLPVHGEIQVDNGSKTSSSSSSGSDSGSSSSDSDSDSSSASGSDVGSQKT 255
PP+ P G +GS +S+SSSS S S SSSS S S SSS+S S G +
Sbjct: 374 PPTAPTSGSSSSSSGSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSGGSSS 425
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,538,009
Number of Sequences: 1393205
Number of extensions: 10017629
Number of successful extensions: 100349
Number of sequences better than 10.0: 1324
Number of HSP's better than 10.0 without gapping: 43395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71959
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
