Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004036A_C01 KMC004036A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178281.1| putative ribophorin I; protein id: At2g01720.1 ... 137 1e-31
ref|NP_177766.1| putative ribophorin I (dolichyl-diphosphooligos... 111 7e-24
emb|CAB56225.1| ribophorin I [Hordeum vulgare] 109 3e-23
pir||T04482 ribophorin I homolog - barley (fragment) gi|2894378|... 102 3e-21
gb|AAH44106.1| Similar to ribophorin I [Xenopus laevis] 79 4e-14
>ref|NP_178281.1| putative ribophorin I; protein id: At2g01720.1 [Arabidopsis
thaliana] gi|25349899|pir||C84428 probable ribophorin I
[imported] - Arabidopsis thaliana
gi|4220476|gb|AAD12699.1| putative ribophorin I
[Arabidopsis thaliana]
Length = 464
Score = 137 bits (345), Expect = 1e-31
Identities = 63/89 (70%), Positives = 75/89 (83%)
Frame = -3
Query: 648 KLIVKVVLPEGSKDPAAVIPFEVEQHLETKYSYLDVVGRTVVALEKRNVVPEHNTPFQVY 469
KL +KVVLPEGSKDP+AV+PF V Q L+ KYSYLD+VGRTVV L+K NVVP HN PFQVY
Sbjct: 366 KLTIKVVLPEGSKDPSAVLPFTVNQELQVKYSYLDIVGRTVVVLQKDNVVPTHNVPFQVY 425
Query: 468 YNFNPIFMLAEPLMLVSVFFFLFMSAVAY 382
Y F PI+MLAEP MLVS FF +F++++AY
Sbjct: 426 YTFKPIYMLAEPFMLVSAFFLVFVASLAY 454
>ref|NP_177766.1| putative ribophorin I (dolichyl-diphosphooligosaccharide-protein
glycosyltransferase); protein id: At1g76400.1, supported
by cDNA: gi_19698900 [Arabidopsis thaliana]
gi|25349897|pir||F96791 hypothetical protein F15M4.10
[imported] - Arabidopsis thaliana
gi|6554479|gb|AAF16661.1|AC012394_10 putative ribophorin
I (dolichyl-diphosphooligosaccharide-protein
glycosyltransferase); 43789-46748 [Arabidopsis thaliana]
gi|19698901|gb|AAL91186.1| putative
dolichyl-diphosphooligosaccharide-protein
glycosyltransferase [Arabidopsis thaliana]
gi|22136202|gb|AAM91179.1| putative
dolichyl-diphosphooligosaccharide-protein
glycosyltransferase [Arabidopsis thaliana]
gi|22655006|gb|AAM98094.1| At1g76400/F15M4_10
[Arabidopsis thaliana]
Length = 614
Score = 111 bits (278), Expect = 7e-24
Identities = 54/89 (60%), Positives = 67/89 (74%)
Frame = -3
Query: 648 KLIVKVVLPEGSKDPAAVIPFEVEQHLETKYSYLDVVGRTVVALEKRNVVPEHNTPFQVY 469
KLIV+VVLPEGSKD + PF V+Q E KYS+LD+ GR VV LEK NVVP+HN QVY
Sbjct: 366 KLIVQVVLPEGSKDISVTTPFAVKQSQEIKYSHLDIAGRPVVVLEKNNVVPDHNQHIQVY 425
Query: 468 YNFNPIFMLAEPLMLVSVFFFLFMSAVAY 382
Y F+ I +L+EPLML+S FF LF++ + Y
Sbjct: 426 YKFSNINLLSEPLMLISGFFILFITCIIY 454
>emb|CAB56225.1| ribophorin I [Hordeum vulgare]
Length = 265
Score = 109 bits (273), Expect = 3e-23
Identities = 53/89 (59%), Positives = 65/89 (72%)
Frame = -3
Query: 648 KLIVKVVLPEGSKDPAAVIPFEVEQHLETKYSYLDVVGRTVVALEKRNVVPEHNTPFQVY 469
KLIVKVVLPEGSKD PF Q E KYS+LD+ GR V+ LEK +V+PEHN FQVY
Sbjct: 17 KLIVKVVLPEGSKDFDVSAPFPANQWQEVKYSHLDIAGRPVLILEKADVIPEHNLHFQVY 76
Query: 468 YNFNPIFMLAEPLMLVSVFFFLFMSAVAY 382
Y FN I +L EP+ML++ FF LF++ +AY
Sbjct: 77 YKFNNISLLIEPMMLITGFFLLFVACIAY 105
>pir||T04482 ribophorin I homolog - barley (fragment) gi|2894378|emb|CAA74910.1|
putative ribophorin I homologue [Hordeum vulgare subsp.
vulgare]
Length = 473
Score = 102 bits (255), Expect = 3e-21
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = -3
Query: 648 KLIVKVVLPEGSKDPAAVIPFEVEQHLETKYSYLDVVGRTVVALEKRNVVPEHNTPFQVY 469
KLIVKVVLPEGSKD PF Q E YS+LD+ GR V+ LEK +V+PEHN FQVY
Sbjct: 365 KLIVKVVLPEGSKDFDVSAPFPANQWQE--YSHLDIAGRPVLILEKADVIPEHNLHFQVY 422
Query: 468 YNFNPIFMLAEPLMLVSVFFFLFMSAVAY 382
Y FN I +L EP+ML++ FF LF++ +AY
Sbjct: 423 YKFNNISLLIEPMMLITGFFLLFVACIAY 451
>gb|AAH44106.1| Similar to ribophorin I [Xenopus laevis]
Length = 595
Score = 79.3 bits (194), Expect = 4e-14
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -3
Query: 645 LIVKVVLPEGSKDPAAVIPFEVEQHL-ETKYSYLDVVGRTVVALEKRNVVPEHNTPFQVY 469
L VK++LPEG+K+ P+E+ + E Y+YLD GRTV+ K N+V +H V+
Sbjct: 356 LTVKIILPEGAKNLQVDNPYEINRAPDELHYTYLDTFGRTVIIAHKNNLVEQHIQDIVVH 415
Query: 468 YNFNPIFMLAEPLMLVSVFFFLFMSAVAY 382
Y+FN I ML EPL++V F+ LF + + Y
Sbjct: 416 YSFNKILMLQEPLLVVGAFYILFFTVILY 444
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,167,701
Number of Sequences: 1393205
Number of extensions: 12114643
Number of successful extensions: 31421
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 30420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31377
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
