Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004035A_C01 KMC004035A_c01
(810 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02373 finger protein BBF2a - common tobacco (fragment) gi|... 79 6e-14
pir||T02203 finger protein Dof - common tobacco (fragment) gi|33... 72 1e-11
gb|AAO29947.1| putative DOF zinc finger protein [Arabidopsis tha... 67 2e-10
ref|NP_182182.1| Dof zinc finger protein; protein id: At2g46590.... 67 2e-10
sp|Q9ZPY0|DAG2_ARATH DOF zinc finger protein DAG2 (Dof affecting... 67 2e-10
>pir||T02373 finger protein BBF2a - common tobacco (fragment)
gi|1360084|emb|CAA66604.1| Zn finger protein [Nicotiana
tabacum]
Length = 238
Score = 79.3 bits (194), Expect = 6e-14
Identities = 49/104 (47%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Frame = -2
Query: 806 SFMPVPVSADPNTVYTTCGFPMHDFKPTLNFTLD---GNGSDYASFQGHVQDTST-GRVL 639
SFMP+P+S DPN+VY++ LNF+LD G DY + VQD++T GR+L
Sbjct: 151 SFMPMPIS-DPNSVYSS-----------LNFSLDYGLGISGDYENNLQDVQDSTTSGRLL 198
Query: 638 FPFEDLKQVSSTTARMDHNNDKEVQQGDSAGYWSGMLGG-GGSW 510
FPFEDLKQ+S+T+ N + G+S GYW+ +LGG GGSW
Sbjct: 199 FPFEDLKQISNTSIDCAEEN----RDGESNGYWNAVLGGNGGSW 238
>pir||T02203 finger protein Dof - common tobacco (fragment)
gi|3341468|emb|CAA08755.1| Dof zinc finger protein
[Nicotiana tabacum]
Length = 262
Score = 72.0 bits (175), Expect = 1e-11
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 8/104 (7%)
Frame = -2
Query: 806 SFMP--VPVSADPNTVY---TTCGFP-MHDFKPTLNFTLDG--NGSDYASFQGHVQDTST 651
SFM +P +D N + ++ G P +HD KPTLNF+LDG N + Y S QG +T+
Sbjct: 161 SFMSSIMPQLSDSNNIMYSSSSTGLPNLHDLKPTLNFSLDGFDNNNGYGSLQG---ETAG 217
Query: 650 GRVLFPFEDLKQVSSTTARMDHNNDKEVQQGDSAGYWSGMLGGG 519
++ FP +DLK VS+ + + Q +S G+W+GMLGGG
Sbjct: 218 XKLFFPLDDLKNVSTPNDDHEFDEQNRGQAAESHGFWNGMLGGG 261
>gb|AAO29947.1| putative DOF zinc finger protein [Arabidopsis thaliana]
Length = 357
Score = 67.4 bits (163), Expect = 2e-10
Identities = 51/121 (42%), Positives = 65/121 (53%), Gaps = 22/121 (18%)
Frame = -2
Query: 806 SFMPVPVSADPNTV-YTTCGFP-MHDFKPT-LNFTLD----GNGSDYASFQGHVQDTSTG 648
SFMP D NTV YT+ GFP M D+KP+ L+F+ D G+ S+ S H G
Sbjct: 237 SFMPSGSMMDSNTVLYTSSGFPTMVDYKPSNLSFSTDHQGLGHNSNNRSEALHSDHHQQG 296
Query: 647 RVLFPFED-LKQVSST-TARMDH----------NNDKEVQQGDSAGYWSGML---GGGGS 513
RVLFPF D +K++SS+ T +DH NN+ + GYWSGM GGG S
Sbjct: 297 RVLFPFGDQMKELSSSITQEVDHDDNQQQKSHGNNNNNNNSSPNNGYWSGMFSTTGGGSS 356
Query: 512 W 510
W
Sbjct: 357 W 357
>ref|NP_182182.1| Dof zinc finger protein; protein id: At2g46590.1 [Arabidopsis
thaliana] gi|25352313|pir||G84904 probable DOF zinc
finger protein [imported] - Arabidopsis thaliana
gi|4415939|gb|AAD20169.1| putative DOF zinc finger
protein [Arabidopsis thaliana]
Length = 356
Score = 67.4 bits (163), Expect = 2e-10
Identities = 51/121 (42%), Positives = 65/121 (53%), Gaps = 22/121 (18%)
Frame = -2
Query: 806 SFMPVPVSADPNTV-YTTCGFP-MHDFKPT-LNFTLD----GNGSDYASFQGHVQDTSTG 648
SFMP D NTV YT+ GFP M D+KP+ L+F+ D G+ S+ S H G
Sbjct: 236 SFMPSGSMMDSNTVLYTSSGFPTMVDYKPSNLSFSTDHQGLGHNSNNRSEALHSDHHQQG 295
Query: 647 RVLFPFED-LKQVSST-TARMDH----------NNDKEVQQGDSAGYWSGML---GGGGS 513
RVLFPF D +K++SS+ T +DH NN+ + GYWSGM GGG S
Sbjct: 296 RVLFPFGDQMKELSSSITQEVDHDDNQQQKSHGNNNNNNNSSPNNGYWSGMFSTTGGGSS 355
Query: 512 W 510
W
Sbjct: 356 W 356
>sp|Q9ZPY0|DAG2_ARATH DOF zinc finger protein DAG2 (Dof affecting germination 2)
gi|13624639|emb|CAC36939.1| putative DNA binding protein
[Arabidopsis thaliana] gi|13624641|emb|CAC36940.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 369
Score = 67.4 bits (163), Expect = 2e-10
Identities = 51/121 (42%), Positives = 65/121 (53%), Gaps = 22/121 (18%)
Frame = -2
Query: 806 SFMPVPVSADPNTV-YTTCGFP-MHDFKPT-LNFTLD----GNGSDYASFQGHVQDTSTG 648
SFMP D NTV YT+ GFP M D+KP+ L+F+ D G+ S+ S H G
Sbjct: 249 SFMPSGSMMDSNTVLYTSSGFPTMVDYKPSNLSFSTDHQGLGHNSNNRSEALHSDHHQQG 308
Query: 647 RVLFPFED-LKQVSST-TARMDH----------NNDKEVQQGDSAGYWSGML---GGGGS 513
RVLFPF D +K++SS+ T +DH NN+ + GYWSGM GGG S
Sbjct: 309 RVLFPFGDQMKELSSSITQEVDHDDNQQQKSHGNNNNNNNSSPNNGYWSGMFSTTGGGSS 368
Query: 512 W 510
W
Sbjct: 369 W 369
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 687,441,073
Number of Sequences: 1393205
Number of extensions: 15011141
Number of successful extensions: 30851
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30747
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
