Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004030A_C01 KMC004030A_c01
(723 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65252.1| unknown [Arabidopsis thaliana] 54 2e-06
ref|NP_567863.1| Expressed protein; protein id: At4g30993.1, sup... 54 2e-06
dbj|BAB71415.1| unnamed protein product [Homo sapiens] 33 4.0
ref|XP_040383.3| similar to Hypothetical protein KIAA1309 [Homo ... 33 4.0
ref|XP_234162.1| similar to hypothetical protein MGC47138 [Mus m... 33 4.0
>gb|AAM65252.1| unknown [Arabidopsis thaliana]
Length = 285
Score = 53.9 bits (128), Expect = 2e-06
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -1
Query: 723 RMFLKFAVNVYLSGQDCTNHGNDGSVAYIGNPGLVEKEPYSIFLNGNSHYSRGLANGILL 544
++ K+ VN+Y+S + CT G++ S+ I P E + ++ R +G LL
Sbjct: 199 QIMTKYGVNLYISEKGCTRGGSNESLTCITVPNQQENQ------GPTNNSKREREDGFLL 252
Query: 543 HRVSSMQIVTYYINLVGEVAFKNVLQQKGTDVM 445
HRVS + VTY IN GEV +++QKG + +
Sbjct: 253 HRVSFSEFVTYTINSSGEVIDTKLVKQKGKETI 285
>ref|NP_567863.1| Expressed protein; protein id: At4g30993.1, supported by cDNA:
37878. [Arabidopsis thaliana]
gi|26453191|dbj|BAC43670.1| unknown protein [Arabidopsis
thaliana]
Length = 285
Score = 53.9 bits (128), Expect = 2e-06
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -1
Query: 723 RMFLKFAVNVYLSGQDCTNHGNDGSVAYIGNPGLVEKEPYSIFLNGNSHYSRGLANGILL 544
++ K+ VN+Y+S + CT G++ S+ I P E + ++ R +G LL
Sbjct: 199 QIMTKYGVNLYISEKGCTRGGSNESLTCITVPNQQENQ------GPTNNSKREREDGFLL 252
Query: 543 HRVSSMQIVTYYINLVGEVAFKNVLQQKGTDVM 445
HRVS + VTY IN GEV +++QKG + +
Sbjct: 253 HRVSFSEFVTYTINSSGEVIDTKLVKQKGKETI 285
>dbj|BAB71415.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 33.1 bits (74), Expect = 4.0
Identities = 26/69 (37%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Frame = +3
Query: 39 LITNLVHVIARATLYLDLPFLVTSGCNFIL*KCCLHRELCICIRQLRYLLKI-ITILG-R 212
L N VH I +A +Y+ L +V C+F+L K CL C +R L + I G R
Sbjct: 96 LSMNTVHEILQAAMYVQLIEVVKFCCSFLLAKICLEN----CAEIMRLLDDFGVNIEGVR 151
Query: 213 NKLQILLLD 239
KL LLD
Sbjct: 152 EKLDTFLLD 160
>ref|XP_040383.3| similar to Hypothetical protein KIAA1309 [Homo sapiens]
Length = 604
Score = 33.1 bits (74), Expect = 4.0
Identities = 26/69 (37%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Frame = +3
Query: 39 LITNLVHVIARATLYLDLPFLVTSGCNFIL*KCCLHRELCICIRQLRYLLKI-ITILG-R 212
L N VH I +A +Y+ L +V C+F+L K CL C +R L + I G R
Sbjct: 96 LSMNTVHEILQAAMYVQLIEVVKFCCSFLLAKICLEN----CAEIMRLLDDFGVNIEGVR 151
Query: 213 NKLQILLLD 239
KL LLD
Sbjct: 152 EKLDTFLLD 160
>ref|XP_234162.1| similar to hypothetical protein MGC47138 [Mus musculus] [Rattus
norvegicus]
Length = 248
Score = 33.1 bits (74), Expect = 4.0
Identities = 26/69 (37%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Frame = +3
Query: 39 LITNLVHVIARATLYLDLPFLVTSGCNFIL*KCCLHRELCICIRQLRYLLKI-ITILG-R 212
L N VH I +A +Y+ L +V C+F+L K CL C +R L + I G R
Sbjct: 96 LSMNTVHEILQAAMYVQLIEVVKFCCSFLLAKICLEN----CAEIMRLLDDFGVNIEGVR 151
Query: 213 NKLQILLLD 239
KL LLD
Sbjct: 152 EKLDAFLLD 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,598,612
Number of Sequences: 1393205
Number of extensions: 13051209
Number of successful extensions: 30130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 29153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30124
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
