Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004027A_C01 KMC004027A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39817|CALX_SOYBN CALNEXIN HOMOLOG PRECURSOR gi|7441504|pir||... 140 1e-32
sp|O82709|CALX_PEA Calnexin homolog precursor gi|3702620|emb|CAA... 119 3e-26
emb|CAD40786.1| OSJNBb0012E08.10 [Oryza sativa (japonica cultiva... 111 7e-24
sp|Q39994|CALX_HELTU Calnexin homolog precursor gi|7441505|pir||... 111 7e-24
ref|NP_200987.1| calnexin - like protein; protein id: At5g61790.... 99 5e-20
>sp|Q39817|CALX_SOYBN CALNEXIN HOMOLOG PRECURSOR gi|7441504|pir||T06415 calnexin -
soybean gi|669003|gb|AAA80588.1| calnexin
Length = 546
Score = 140 bits (353), Expect = 1e-32
Identities = 76/103 (73%), Positives = 87/103 (83%), Gaps = 4/103 (3%)
Frame = -1
Query: 570 KIADIPFLSEHRPKIYDLIEKAEKQPNLTIGAIVAIVVVFLTIFFRLIFGGKKPAPKVVE 391
KIADIPFLSEH+ KI+DLIEKAEKQPNLTIG +VA+VVVF++IFFRLIFGGKKPA KV
Sbjct: 447 KIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGGKKPA-KV-- 503
Query: 390 KKKTERPEASTNQASGENDENQE----KEDTSNAPRRRTRRDT 274
+KK ER EAS NQ SGEN+EN+E KE+ SNA RRR RR+T
Sbjct: 504 EKKPERTEASNNQGSGENEENKEKEKQKEEASNAARRRPRRET 546
>sp|O82709|CALX_PEA Calnexin homolog precursor gi|3702620|emb|CAA76741.1| calnexin
[Pisum sativum]
Length = 551
Score = 119 bits (298), Expect = 3e-26
Identities = 62/100 (62%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Frame = -1
Query: 570 KIADIPFLSEHRPKIYDLIEKAEKQPNLTIGAIVAIVVVFLTIFFRLIFGGKKPA--PKV 397
KIADI FLS + KI ++IEK EKQPNLTIG IV++V+VF++IFFRLIFGGKKPA
Sbjct: 452 KIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGGKKPANVEAN 511
Query: 396 VEKKKTERPEASTNQASGENDENQEKEDTSNAPRRRTRRD 277
VEKKKT E ++ Q GE ++N+EKE+T+N PRRR +RD
Sbjct: 512 VEKKKT-NTETTSKQDGGEKEDNKEKEETANPPRRRPKRD 550
>emb|CAD40786.1| OSJNBb0012E08.10 [Oryza sativa (japonica cultivar-group)]
Length = 537
Score = 111 bits (277), Expect = 7e-24
Identities = 52/104 (50%), Positives = 81/104 (77%), Gaps = 5/104 (4%)
Frame = -1
Query: 570 KIADIPFLSEHRPKIYDLIEKAEKQPNLTIGAIVAIVVVFLTIFFRLIFGGKKPAPKVVE 391
K+ADIPFL ++ KI D+IEK EKQPN+TIG +V+IVVVF+T+ FR++FGGKKPA V
Sbjct: 434 KLADIPFLEPYKTKIIDVIEKGEKQPNITIGILVSIVVVFVTVLFRILFGGKKPAAPVKP 493
Query: 390 KKKTERPEASTNQASG-----ENDENQEKEDTSNAPRRRTRRDT 274
+ ++P+++ ++A+G E+++ +E++D + APRRR+RR+T
Sbjct: 494 VAEVKKPKSTESEAAGSSGGKEDEKEEEEKDGAAAPRRRSRRET 537
>sp|Q39994|CALX_HELTU Calnexin homolog precursor gi|7441505|pir||T10892 probable calnexin
- Jerusalem artichoke gi|510907|emb|CAA84491.1| calnexin
[Helianthus tuberosus]
Length = 540
Score = 111 bits (277), Expect = 7e-24
Identities = 56/100 (56%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Frame = -1
Query: 570 KIADIPFLSEHRPKIYDLIEKAEKQPNLTIGAIVAIVVVFLTIFFRLIFGGKKPAPKV-V 394
KIAD+PFL +H+ K+ +LIEKAE QPN+TIG IV+I+VV +I +L+FGGKK APKV V
Sbjct: 441 KIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGGKKAAPKVNV 500
Query: 393 EKKKTERPEASTNQASGENDENQEKEDTSNAPRRRTRRDT 274
KK E PEAS E +E + + + + APRRR RRDT
Sbjct: 501 VPKKKEEPEASNTAEVREGEEEKTEGEVAAAPRRRPRRDT 540
>ref|NP_200987.1| calnexin - like protein; protein id: At5g61790.1, supported by
cDNA: 2869., supported by cDNA: gi_15292686, supported
by cDNA: gi_16649020 [Arabidopsis thaliana]
gi|231683|sp|P29402|CAX1_ARATH Calnexin homolog 1
precursor gi|421825|pir||JN0597 calnexin-like protein -
Arabidopsis thaliana gi|16211|emb|CAA79144.1| calnexin
homolog [Arabidopsis thaliana]
gi|10176872|dbj|BAB10079.1| calnexin homolog precursor
[Arabidopsis thaliana] gi|16649021|gb|AAL24362.1|
calnexin homolog precursor [Arabidopsis thaliana]
gi|21387169|gb|AAM47988.1| calnexin-like protein
precursor [Arabidopsis thaliana]
gi|21555674|gb|AAM63911.1| calnexin-like protein
[Arabidopsis thaliana]
Length = 530
Score = 98.6 bits (244), Expect = 5e-20
Identities = 53/98 (54%), Positives = 72/98 (73%)
Frame = -1
Query: 570 KIADIPFLSEHRPKIYDLIEKAEKQPNLTIGAIVAIVVVFLTIFFRLIFGGKKPAPKVVE 391
K+AD+ FLS ++ KI +LIEKAE+QPNLTIG +VAIVVVF ++F +LIFGGKK A V +
Sbjct: 438 KVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGKKAAAPVEK 497
Query: 390 KKKTERPEASTNQASGENDENQEKEDTSNAPRRRTRRD 277
KK PE + + SG DE ++KE+T+ +R+ RRD
Sbjct: 498 KK----PEVAESSKSG--DEAEKKEETAAPRKRQPRRD 529
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,019,730
Number of Sequences: 1393205
Number of extensions: 10844666
Number of successful extensions: 41851
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 39163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41721
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
