Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004026A_C01 KMC004026A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK73147.1|AC079022_20 putative RING-H2 finger protein [Oryza... 131 4e-30
ref|NP_190246.1| putative protein; protein id: At3g46620.1, supp... 123 1e-27
dbj|BAA97489.1| emb|CAB62332.1~gene_id:F2O15.22~strong similarit... 121 3e-27
ref|NP_568910.1| putative protein; protein id: At5g59550.1, supp... 121 3e-27
gb|AAM23237.1|AC092553_3 Putative RING-H2 finger protein [Oryza ... 108 4e-23
>gb|AAK73147.1|AC079022_20 putative RING-H2 finger protein [Oryza sativa]
Length = 386
Score = 131 bits (329), Expect = 4e-30
Identities = 78/151 (51%), Positives = 91/151 (59%), Gaps = 12/151 (7%)
Frame = +3
Query: 57 PNKMNSDTQPATTSSYWCYSCNRFVHL-LDHND--VVCPHCQSGFVEEIHAGHSPAVSLF 227
P+ +S A SSYWCYSC+RFV H+D V CP C GF+EE+ A A L
Sbjct: 6 PSSSSSPPSAAGASSYWCYSCDRFVRAPAPHDDSAVACPDCGGGFLEEMSAPPPRAAYLR 65
Query: 228 ADGIHASRRQGFRRRRRNA-----GSRSPFNPVIVLRGPGDDAAGADNDG----SSFELF 380
H + RR RR A G RSPFNPVIVLR AA D+D +SFELF
Sbjct: 66 RPRAHHANDLRLRRTRRAAAAAAAGDRSPFNPVIVLRR--SPAAAGDDDSLAAATSFELF 123
Query: 381 YDDGDGTGLRPLPPTMSELLLGSGFDRLLDQ 473
YDDG G+GLRPLP TMS+ L+GSGF+RLLDQ
Sbjct: 124 YDDGAGSGLRPLPETMSDFLMGSGFERLLDQ 154
>ref|NP_190246.1| putative protein; protein id: At3g46620.1, supported by cDNA:
gi_20260607 [Arabidopsis thaliana]
gi|11357352|pir||T45599 hypothetical protein F12A12.140
- Arabidopsis thaliana gi|6523065|emb|CAB62332.1|
putative protein [Arabidopsis thaliana]
gi|20260608|gb|AAM13202.1| putative protein [Arabidopsis
thaliana]
Length = 395
Score = 123 bits (308), Expect = 1e-27
Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 24/170 (14%)
Frame = +3
Query: 36 TRSTQLVPNKMNSDTQPATTS----SYWCYSCNRFVHLLDHND----VVCPHCQSGFVEE 191
+RS + P ++ T TT+ SYWCYSC RF+ + + D V+CP+C GF+EE
Sbjct: 5 SRSATITPTTESTTTTTTTTTTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEE 64
Query: 192 IHAGHS------PAVSLFADGIHASRRQGFRRRRRNAGSRSPFNPVIVLRGPGDDAAGA- 350
I + PA + + + R RRRR N R+ FNPVIVL G G AG
Sbjct: 65 IEDSSNSTVAAIPASTPEVRSVEETHRSIIRRRRSNR--RTSFNPVIVLHGGGGGGAGER 122
Query: 351 ----DNDGSS-----FELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLDQ 473
+ DG++ +E +YDDG G+GLRPLP ++SE+L+GSGF+RLL+Q
Sbjct: 123 VENEEGDGATRERRAYEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQ 172
>dbj|BAA97489.1| emb|CAB62332.1~gene_id:F2O15.22~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 512
Score = 121 bits (304), Expect = 3e-27
Identities = 70/156 (44%), Positives = 93/156 (58%), Gaps = 21/156 (13%)
Frame = +3
Query: 69 NSDTQPATTS----SYWCYSCNRFVHLLDHN------DVVCPHCQSGFVEEIHAGHSPAV 218
++ T P TT+ SYWCYSC RFV + V CPHC GF+E+I+ S A
Sbjct: 108 STPTTPTTTTPITASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAAT 167
Query: 219 SLFADG------IHASRRQGFRRRRRNAGSRSPFNPVIVLRG-PGDDAAGADNDGS---- 365
L I+ +RR RRRR +G R FNPVIVL+G G+ G + D +
Sbjct: 168 ELTIPASTEVRSINNNRRSVIRRRR--SGRRPSFNPVIVLQGGAGEREEGEEGDAARDRR 225
Query: 366 SFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLDQ 473
+FE +YDDG G+GLRPLP ++SE+L+GSGF+RLL+Q
Sbjct: 226 AFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQ 261
>ref|NP_568910.1| putative protein; protein id: At5g59550.1, supported by cDNA:
gi_15450686, supported by cDNA: gi_17380611 [Arabidopsis
thaliana] gi|15450687|gb|AAK96615.1| AT5g59550/f2o15_210
[Arabidopsis thaliana] gi|17380612|gb|AAL36069.1|
AT5g59550/f2o15_210 [Arabidopsis thaliana]
Length = 407
Score = 121 bits (304), Expect = 3e-27
Identities = 70/156 (44%), Positives = 93/156 (58%), Gaps = 21/156 (13%)
Frame = +3
Query: 69 NSDTQPATTS----SYWCYSCNRFVHLLDHN------DVVCPHCQSGFVEEIHAGHSPAV 218
++ T P TT+ SYWCYSC RFV + V CPHC GF+E+I+ S A
Sbjct: 3 STPTTPTTTTPITASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAAT 62
Query: 219 SLFADG------IHASRRQGFRRRRRNAGSRSPFNPVIVLRG-PGDDAAGADNDGS---- 365
L I+ +RR RRRR +G R FNPVIVL+G G+ G + D +
Sbjct: 63 ELTIPASTEVRSINNNRRSVIRRRR--SGRRPSFNPVIVLQGGAGEREEGEEGDAARDRR 120
Query: 366 SFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLDQ 473
+FE +YDDG G+GLRPLP ++SE+L+GSGF+RLL+Q
Sbjct: 121 AFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQ 156
>gb|AAM23237.1|AC092553_3 Putative RING-H2 finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 217
Score = 108 bits (269), Expect = 4e-23
Identities = 73/162 (45%), Positives = 92/162 (56%), Gaps = 13/162 (8%)
Frame = +3
Query: 27 SNPTRSTQLVPNKMNSDTQPATTSSYWCYSCNRFVHLLDHND--VVCPHCQSGFVEEIHA 200
S+P+ S P+ + PA+ SSYWCY+C+ FV H D V P+ G +EE+
Sbjct: 3 SSPSSSFSSSPSAAGA--APAS-SSYWCYNCDPFVRAAPHKDSAVAYPNYGGGILEEM-- 57
Query: 201 GHSPAVSLFADGIHASRRQGFRRRRR-------NAGSRSPFNPVIVL-RGPGDDAAGADN 356
G P + + A + R RR A RSPFNPVIVL R P AAG D+
Sbjct: 58 GAPPPCTAYLRHPCAHHAKDLRLRRTCCADAVAAADDRSPFNPVIVLCRSPAAVAAGDDD 117
Query: 357 D---GSSFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLDQ 473
+SFELFYDDG G+GLRPLP TMS+ L+GS F+RLLDQ
Sbjct: 118 SLATVTSFELFYDDGVGSGLRPLPETMSDFLMGSAFERLLDQ 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,217,834
Number of Sequences: 1393205
Number of extensions: 11954356
Number of successful extensions: 114716
Number of sequences better than 10.0: 3034
Number of HSP's better than 10.0 without gapping: 74544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104966
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
