Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004022A_C01 KMC004022A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09513.1| GMFP4 [Glycine max] 103 2e-42
ref|NP_564399.1| expressed protein; protein id: At1g32400.1, sup... 91 4e-36
pir||A86449 hypothetical protein F5D14.17 - Arabidopsis thaliana... 91 4e-36
dbj|BAC65018.1| P0498E12.14 [Oryza sativa (japonica cultivar-gro... 56 5e-07
ref|NP_194606.1| putative protein; protein id: At4g28770.1, supp... 35 0.91
>gb|AAD09513.1| GMFP4 [Glycine max]
Length = 111
Score = 103 bits (256), Expect(2) = 2e-42
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 658 EVLLFLLALIVRASNRPADYDSDEEFINPRQQARQPLLNRPAGPATGPPASGTLDQRPSQ 479
+ LLF+LALIVRA+NRP +YDSDEE+INPRQQARQP LNRPAGP +G PA+GTLDQRPS+
Sbjct: 6 QALLFVLALIVRAANRPTEYDSDEEYINPRQQARQPFLNRPAGPVSGAPATGTLDQRPSR 65
Score = 91.7 bits (226), Expect(2) = 2e-42
Identities = 43/55 (78%), Positives = 46/55 (83%)
Frame = -3
Query: 504 GHLISAQARNDAWSTRMREKYGLDTSEFTYNPSESQRFQQVNAPPTEERSRCTIM 340
G L +RNDAWSTRMREKYGLDTSEFTYNPSES R+QQVN+ PTEE SRC IM
Sbjct: 57 GTLDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESHRYQQVNSQPTEEGSRCAIM 111
>ref|NP_564399.1| expressed protein; protein id: At1g32400.1, supported by cDNA:
7849., supported by cDNA: gi_12248018, supported by
cDNA: gi_14326468 [Arabidopsis thaliana]
gi|12248019|gb|AAG50101.1|AF334723_1 unknown protein
[Arabidopsis thaliana]
gi|14326469|gb|AAK60280.1|AF385687_1 At1g32400/F5D14_22
[Arabidopsis thaliana] gi|21595337|gb|AAM66092.1|
unknown [Arabidopsis thaliana]
gi|25006245|dbj|BAC24019.1| tobamovirus multiplication
2A [Arabidopsis thaliana]
Length = 280
Score = 90.9 bits (224), Expect(2) = 4e-36
Identities = 42/62 (67%), Positives = 51/62 (81%)
Frame = -2
Query: 664 VFEVLLFLLALIVRASNRPADYDSDEEFINPRQQARQPLLNRPAGPATGPPASGTLDQRP 485
VFE LLFLLAL+VRA+N PA+YDSD+E++ PRQQ RQP +NR A P TG P + TLDQRP
Sbjct: 173 VFEALLFLLALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRP 232
Query: 484 SQ 479
S+
Sbjct: 233 SR 234
Score = 82.8 bits (203), Expect(2) = 4e-36
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -3
Query: 483 ARNDAWSTRMREKYGLDTSEFTYNPSESQRFQQVNAPPTEERSRCTIM 340
+R+D WS RMREKYGLDTSEFTYNPSES RFQQ+ A P EE+ RCTIM
Sbjct: 233 SRSDPWSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280
>pir||A86449 hypothetical protein F5D14.17 - Arabidopsis thaliana
gi|8920615|gb|AAF81337.1|AC007767_17 Contains similarity
to GMFP4 from Glycine max gb|U64915. ESTs gb|AV442477,
gb|AV441037, gb|AV534954, gb|AV560678 and gb|AV518757
come from this gene. [Arabidopsis thaliana]
Length = 252
Score = 90.9 bits (224), Expect(2) = 4e-36
Identities = 42/62 (67%), Positives = 51/62 (81%)
Frame = -2
Query: 664 VFEVLLFLLALIVRASNRPADYDSDEEFINPRQQARQPLLNRPAGPATGPPASGTLDQRP 485
VFE LLFLLAL+VRA+N PA+YDSD+E++ PRQQ RQP +NR A P TG P + TLDQRP
Sbjct: 145 VFEALLFLLALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRP 204
Query: 484 SQ 479
S+
Sbjct: 205 SR 206
Score = 82.8 bits (203), Expect(2) = 4e-36
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -3
Query: 483 ARNDAWSTRMREKYGLDTSEFTYNPSESQRFQQVNAPPTEERSRCTIM 340
+R+D WS RMREKYGLDTSEFTYNPSES RFQQ+ A P EE+ RCTIM
Sbjct: 205 SRSDPWSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 252
>dbj|BAC65018.1| P0498E12.14 [Oryza sativa (japonica cultivar-group)]
Length = 249
Score = 55.8 bits (133), Expect = 5e-07
Identities = 30/63 (47%), Positives = 39/63 (61%)
Frame = -3
Query: 528 QPQAPQLLGHLISAQARNDAWSTRMREKYGLDTSEFTYNPSESQRFQQVNAPPTEERSRC 349
QP A + +L RNDAWS RMREKYG+D T++P+ RFQQ P E+R+RC
Sbjct: 194 QPVADPRVPNLDYRPIRNDAWSQRMREKYGVD----TFDPN---RFQQATISPAEQRNRC 246
Query: 348 TIM 340
I+
Sbjct: 247 AIL 249
Score = 54.3 bits (129), Expect = 1e-06
Identities = 29/60 (48%), Positives = 39/60 (64%)
Frame = -2
Query: 664 VFEVLLFLLALIVRASNRPADYDSDEEFINPRQQARQPLLNRPAGPATGPPASGTLDQRP 485
+FE +LF +ALIV++ N+ ADYDSD+E+I PR RQPL+N+ P LD RP
Sbjct: 153 LFEAVLFTVALIVQSGNQ-ADYDSDDEYIAPRSSTRQPLVNK---QPVADPRVPNLDYRP 208
>ref|NP_194606.1| putative protein; protein id: At4g28770.1, supported by cDNA: 1968.
[Arabidopsis thaliana] gi|7485528|pir||T04522
hypothetical protein F16A16.120 - Arabidopsis thaliana
gi|4218121|emb|CAA22975.1| putative protein [Arabidopsis
thaliana] gi|7269732|emb|CAB81465.1| putative protein
[Arabidopsis thaliana] gi|21554050|gb|AAM63131.1|
unknown [Arabidopsis thaliana]
gi|29029076|gb|AAO64917.1| At4g28770 [Arabidopsis
thaliana]
Length = 281
Score = 35.0 bits (79), Expect = 0.91
Identities = 21/55 (38%), Positives = 33/55 (59%), Gaps = 2/55 (3%)
Frame = -2
Query: 658 EVLLFLLALIVRA--SNRPADYDSDEEFINPRQQARQPLLNRPAGPATGPPASGT 500
++L LLAL++RA S R ++ D +++F NP +AR LL GP +SG+
Sbjct: 205 QLLSLLLALVLRAMVSPRQSELDDEDDFENPMSRARDNLL----GPQANQTSSGS 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,924,681
Number of Sequences: 1393205
Number of extensions: 14305691
Number of successful extensions: 55174
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 52657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55094
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
