Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004021A_C01 KMC004021A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177728.1| unknown protein; protein id: At1g76020.1 [Arabi... 75 2e-13
ref|NP_683315.1| unknown protein; protein id: At1g20225.1, suppo... 66 1e-10
pir||H86335 T20H2.2 protein - Arabidopsis thaliana gi|8778978|gb... 64 3e-10
gb|AAF79818.1|AC007396_19 T4O12.23 [Arabidopsis thaliana] 50 9e-06
gb|EAA24497.1| Glutamyl-tRNA synthetase [Fusobacterium nucleatum... 35 0.29
>ref|NP_177728.1| unknown protein; protein id: At1g76020.1 [Arabidopsis thaliana]
Length = 225
Score = 75.1 bits (183), Expect = 2e-13
Identities = 35/57 (61%), Positives = 41/57 (71%)
Frame = -2
Query: 414 DHQTRISFKYAASRGVYGTPFFYVNGFLLPDVGDSLDYQTWKKIIDPLVGAEKNVKN 244
D TR+SFKY+ASRGVYGTP FYVNGF+L D ++ WKKIIDPLV A + N
Sbjct: 164 DRATRVSFKYSASRGVYGTPTFYVNGFVLSDAASPSNFGGWKKIIDPLVQAHEMEDN 220
>ref|NP_683315.1| unknown protein; protein id: At1g20225.1, supported by cDNA:
gi_17065543 [Arabidopsis thaliana]
gi|17065544|gb|AAL32926.1| Unknown protein [Arabidopsis
thaliana] gi|24899723|gb|AAN65076.1| Unknown protein
[Arabidopsis thaliana]
Length = 233
Score = 65.9 bits (159), Expect = 1e-10
Identities = 30/49 (61%), Positives = 34/49 (69%)
Frame = -2
Query: 414 DHQTRISFKYAASRGVYGTPFFYVNGFLLPDVGDSLDYQTWKKIIDPLV 268
D TR+SFKY+ SRGV TP FYVNGF LP G DY+ W+ IDPLV
Sbjct: 165 DLATRVSFKYSVSRGVSATPTFYVNGFELPGAGSPKDYEGWRDTIDPLV 213
>pir||H86335 T20H2.2 protein - Arabidopsis thaliana
gi|8778978|gb|AAF79893.1|AC022472_2 Contains similarity
to pigpen protein from Mus musculus gb|AF224264 and
contains protein of unknown function DUF78 PF|01918
domain. ESTs gb|N38077, gb|BE037702, gb|AV442191,
gb|AV441368, gb|Z17998, gb|AV527266, gb|AV520794,
gb|AI997847, gb|AV543000 come from this gene.
[Arabidopsis thaliana]
Length = 538
Score = 64.3 bits (155), Expect = 3e-10
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = -2
Query: 414 DHQTRISFKYAASRGVYGTPFFYVNGFLLPDVGDSLDYQTWKKIIDPL 271
D TR+SFKY+ SRGV TP FYVNGF LP G DY+ W+ IDPL
Sbjct: 164 DLATRVSFKYSVSRGVSATPTFYVNGFELPGAGSPKDYEGWRDTIDPL 211
>gb|AAF79818.1|AC007396_19 T4O12.23 [Arabidopsis thaliana]
Length = 263
Score = 49.7 bits (117), Expect = 9e-06
Identities = 22/31 (70%), Positives = 25/31 (79%)
Frame = -2
Query: 414 DHQTRISFKYAASRGVYGTPFFYVNGFLLPD 322
D TR+SFKY+ASRGVYGTP FYVNG P+
Sbjct: 164 DRATRVSFKYSASRGVYGTPTFYVNGSSEPN 194
>gb|EAA24497.1| Glutamyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 449
Score = 34.7 bits (78), Expect = 0.29
Identities = 19/72 (26%), Positives = 43/72 (59%)
Frame = -2
Query: 354 FFYVNGFLLPDVGDSLDYQTWKKIIDPLVGAEKNVKNEESLHFFL*KVQVYEV*LHPHFT 175
FF+V+ F LP++ + +D + +K ++ L+ + K+ +S+ F+ K++ +E FT
Sbjct: 328 FFFVDEFSLPELKEDMDKKE-RKSVEKLLNSLKDEVGLKSIKLFIEKLEKWE---GNEFT 383
Query: 174 IKESKECTHCLI 139
+++K+ H L+
Sbjct: 384 AEQAKDLLHSLL 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,411,109
Number of Sequences: 1393205
Number of extensions: 6726357
Number of successful extensions: 16222
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 15645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16189
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
