Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004019A_C01 KMC004019A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22518|RSP4_SOYBN 40S RIBOSOMAL PROTEIN SA (P40) gi|7441124|p... 276 2e-87
ref|NP_177381.1| putative 40S ribosomal protein SA (laminin rece... 276 2e-86
emb|CAA48794.1| laminin receptor homologue [Arabidopsis thaliana] 276 4e-86
sp|Q08682|RSP4_ARATH 40S ribosomal protein SA (p40) (Laminin rec... 276 4e-86
sp|Q9ZSR8|RSP4_BRANA 40S ribosomal protein SA (p40) (Laminin rec... 274 2e-85
>sp|O22518|RSP4_SOYBN 40S RIBOSOMAL PROTEIN SA (P40) gi|7441124|pir||T05733
ribosome-associated protein p40 - soybean
gi|2444420|gb|AAB82659.1| ribosome-associated protein
p40 [Glycine max]
Length = 310
Score = 276 bits (707), Expect(2) = 2e-87
Identities = 132/139 (94%), Positives = 137/139 (97%)
Frame = +3
Query: 213 RRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 392
RR DGIYIINLGKTWEKLQLAAR+IVAIENPQDIIVQSARPYGQRAVLKFAQYTGA+AIA
Sbjct: 48 RRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIA 107
Query: 393 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVG 572
GRHTPGTFTNQ+QTSFSEPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVD+G
Sbjct: 108 GRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 167
Query: 573 IPANNKGKHSIGCLFWLLS 629
IPANNKGKHSIGCLFWLL+
Sbjct: 168 IPANNKGKHSIGCLFWLLA 186
Score = 68.2 bits (165), Expect(2) = 2e-87
Identities = 31/33 (93%), Positives = 33/33 (99%)
Frame = +2
Query: 113 LSQKEADIQMMLAADVHLGTKNCNFQMERYVFK 211
LSQKEADIQMMLAADVHLGTKNC+FQMERY+FK
Sbjct: 15 LSQKEADIQMMLAADVHLGTKNCDFQMERYIFK 47
>ref|NP_177381.1| putative 40S ribosomal protein SA (laminin receptor-like protein);
protein id: At1g72370.1, supported by cDNA: 40091.,
supported by cDNA: gi_15809887, supported by cDNA:
gi_16604530, supported by cDNA: gi_17473614, supported
by cDNA: gi_18958035, supported by cDNA: gi_402903
[Arabidopsis thaliana] gi|25295580|pir||F96747
hypothetical protein T10D10.16 [imported] - Arabidopsis
thaliana gi|402904|gb|AAA53425.1| laminin receptor-like
protein gi|12325280|gb|AAG52587.1|AC016529_18 putative
40S ribosomal protein SA (laminin receptor-like
protein); 68387-70081 [Arabidopsis thaliana]
gi|15809888|gb|AAL06872.1| At1g72370/T10D10_16
[Arabidopsis thaliana] gi|16604531|gb|AAL24271.1|
At1g72370/T10D10_16 [Arabidopsis thaliana]
gi|17473615|gb|AAL38272.1| putative 40S ribosomal
protein SA (laminin receptor-like protein) [Arabidopsis
thaliana] gi|18958036|gb|AAL79591.1| At1g72370/T10D10_16
[Arabidopsis thaliana] gi|21386953|gb|AAM47880.1|
putative 40S ribosomal protein SA (laminin receptor-like
protein) [Arabidopsis thaliana]
gi|21593556|gb|AAM65523.1| putative 40S ribosomal
protein SA (laminin receptor-like protein) [Arabidopsis
thaliana] gi|22530972|gb|AAM96990.1| putative 40S
ribosomal protein SA (laminin receptor-like protein)
[Arabidopsis thaliana] gi|23198426|gb|AAN15740.1|
putative 40S ribosomal protein SA (laminin receptor-like
protein) [Arabidopsis thaliana]
Length = 298
Score = 276 bits (705), Expect(2) = 2e-86
Identities = 131/139 (94%), Positives = 136/139 (97%)
Frame = +3
Query: 213 RRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 392
RR DGIYI NLGKTWEKLQ+AAR+IVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA
Sbjct: 45 RRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 104
Query: 393 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVG 572
GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VD+G
Sbjct: 105 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIG 164
Query: 573 IPANNKGKHSIGCLFWLLS 629
IPANNKGKHSIGCLFWLL+
Sbjct: 165 IPANNKGKHSIGCLFWLLA 183
Score = 65.9 bits (159), Expect(2) = 2e-86
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = +2
Query: 101 SRAWLSQKEADIQMMLAADVHLGTKNCNFQMERYVFK 211
S A LSQKEAD++MM AA+VHLGTKNCN+QMERYVFK
Sbjct: 8 SSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFK 44
>emb|CAA48794.1| laminin receptor homologue [Arabidopsis thaliana]
Length = 298
Score = 276 bits (705), Expect(2) = 4e-86
Identities = 131/139 (94%), Positives = 136/139 (97%)
Frame = +3
Query: 213 RRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 392
RR DGIYI NLGKTWEKLQ+AAR+IVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA
Sbjct: 45 RRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 104
Query: 393 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVG 572
GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VD+G
Sbjct: 105 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIG 164
Query: 573 IPANNKGKHSIGCLFWLLS 629
IPANNKGKHSIGCLFWLL+
Sbjct: 165 IPANNKGKHSIGCLFWLLA 183
Score = 64.7 bits (156), Expect(2) = 4e-86
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = +2
Query: 101 SRAWLSQKEADIQMMLAADVHLGTKNCNFQMERYVFK 211
S A +SQKEAD++MM AA+VHLGTKNCN+QMERYVFK
Sbjct: 8 SSAHVSQKEADVRMMCAAEVHLGTKNCNYQMERYVFK 44
>sp|Q08682|RSP4_ARATH 40S ribosomal protein SA (p40) (Laminin receptor homolog)
gi|2129619|pir||S71247 ribosome-associated protein p40
homolog - Arabidopsis thaliana
gi|1345503|emb|CAA61547.1| 40kD protein [Arabidopsis
thaliana] gi|2102657|emb|CAA71407.1| unnamed protein
product [Arabidopsis thaliana]
Length = 298
Score = 276 bits (705), Expect(2) = 4e-86
Identities = 131/139 (94%), Positives = 136/139 (97%)
Frame = +3
Query: 213 RRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 392
RR DGIYI NLGKTWEKLQ+AAR+IVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA
Sbjct: 45 RRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 104
Query: 393 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVG 572
GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VD+G
Sbjct: 105 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIG 164
Query: 573 IPANNKGKHSIGCLFWLLS 629
IPANNKGKHSIGCLFWLL+
Sbjct: 165 IPANNKGKHSIGCLFWLLA 183
Score = 64.7 bits (156), Expect(2) = 4e-86
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = +2
Query: 101 SRAWLSQKEADIQMMLAADVHLGTKNCNFQMERYVFK 211
S A +SQKEAD++MM AA+VHLGTKNCN+QMERYVFK
Sbjct: 8 SSAHVSQKEADVRMMCAAEVHLGTKNCNYQMERYVFK 44
>sp|Q9ZSR8|RSP4_BRANA 40S ribosomal protein SA (p40) (Laminin receptor-like protein)
gi|3769681|gb|AAC97937.1| laminin receptor-like protein
[Brassica napus]
Length = 292
Score = 274 bits (700), Expect(2) = 2e-85
Identities = 130/139 (93%), Positives = 135/139 (96%)
Frame = +3
Query: 213 RRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 392
RR DGIYI NLGKTWEKL +AAR+IVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA
Sbjct: 42 RRNDGIYIFNLGKTWEKLMMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIA 101
Query: 393 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVG 572
GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VD+G
Sbjct: 102 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIG 161
Query: 573 IPANNKGKHSIGCLFWLLS 629
IPANNKGKHSIGCLFWLL+
Sbjct: 162 IPANNKGKHSIGCLFWLLA 180
Score = 64.3 bits (155), Expect(2) = 2e-85
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +2
Query: 113 LSQKEADIQMMLAADVHLGTKNCNFQMERYVFK 211
LSQKEADI+MM AA+VHLGTKNCN+QMERYVFK
Sbjct: 9 LSQKEADIKMMCAAEVHLGTKNCNYQMERYVFK 41
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,933,774
Number of Sequences: 1393205
Number of extensions: 13467533
Number of successful extensions: 60268
Number of sequences better than 10.0: 409
Number of HSP's better than 10.0 without gapping: 52449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59808
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
