Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004018A_C01 KMC004018A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C96662 hypothetical protein F24D7.9 [imported] - Arabidopsi... 34 0.67
ref|NP_701004.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.67
ref|NP_196011.1| ABC transporter family protein; protein id: At5... 34 0.67
ref|NP_564816.1| expressed protein; protein id: At1g63720.1, sup... 34 0.67
gb|AAM93416.1|AF450324_1 core protein NTPase/VP5 [golden ide reo... 33 1.1
>pir||C96662 hypothetical protein F24D7.9 [imported] - Arabidopsis thaliana
gi|12324942|gb|AAG52421.1|AC011622_9 hypothetical
protein; 31792-32658 [Arabidopsis thaliana]
Length = 288
Score = 34.3 bits (77), Expect = 0.67
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 169 EPLNIILKPPLNHKTKSSIFPTASLPTNP-IFFCKLFSLQLHPNSYLFS*RPFSKKKKEI 345
EP + + PPL+ SSI+ T + P++P + F +LF+ SY + S + +
Sbjct: 85 EPSSAPITPPLDD---SSIYLTTTTPSSPEVPFAQLFNSNHQTGSYGYKFPMSSSYEFQF 141
Query: 346 KYSPPKQP*DQLISVGP 396
PP P QLIS P
Sbjct: 142 YQLPPGSPLGQLISPSP 158
>ref|NP_701004.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496067|gb|AAN35728.1|AE014838_6 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 376
Score = 34.3 bits (77), Expect = 0.67
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Frame = +2
Query: 134 ALSAAYI-ANFSQSH*TLF*SLR*IIKQNLLFFPPLHCQQILFSSVNYFPYNSIQIPTYF 310
ALSA YI S + TL ++ I K NLLF + C + ++ Y P+ + +I T+
Sbjct: 44 ALSAVYINVKLSMKYITL---IKKITKNNLLF-DNICCH---YCNLIYIPFYNCKI-THS 95
Query: 311 PNAHSQ-------KRKKR*NIPHLSNHRIN*YQ*VHS 400
PN KRKK+ N+ HLS H+ N Y HS
Sbjct: 96 PNQGKATYTCLLCKRKKKINLQHLSKHK-NIYPLKHS 131
>ref|NP_196011.1| ABC transporter family protein; protein id: At5g03910.1, supported
by cDNA: gi_16604564, supported by cDNA: gi_20259176
[Arabidopsis thaliana] gi|11357154|pir||T48418 ABC
transporter-like protein - Arabidopsis thaliana
gi|7406401|emb|CAB85511.1| ABC transporter-like protein
[Arabidopsis thaliana] gi|16604565|gb|AAL24084.1|
putative ABC transporter protein [Arabidopsis thaliana]
gi|20259177|gb|AAM14304.1| putative ABC transporter
[Arabidopsis thaliana]
Length = 634
Score = 34.3 bits (77), Expect = 0.67
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 160 LFPEPLNIILKPPLNHKTKSSIF---PTASLPTNPIFFCKLFSLQLHPNS 300
L P P +I PPL+H+ SS+F P P P+ FCK +L+L N+
Sbjct: 6 LTPPPCLLIPPPPLSHRRSSSLFLKHPFQPSP-RPLSFCKPSALRLRANT 54
>ref|NP_564816.1| expressed protein; protein id: At1g63720.1, supported by cDNA:
gi_13878144, supported by cDNA: gi_16226926, supported
by cDNA: gi_17104556 [Arabidopsis thaliana]
gi|13878145|gb|AAK44150.1|AF370335_1 unknown protein
[Arabidopsis thaliana]
gi|16226927|gb|AAL16300.1|AF428370_1 At1g63720/F24D7_9
[Arabidopsis thaliana] gi|17104557|gb|AAL34167.1|
unknown protein [Arabidopsis thaliana]
Length = 358
Score = 34.3 bits (77), Expect = 0.67
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 169 EPLNIILKPPLNHKTKSSIFPTASLPTNP-IFFCKLFSLQLHPNSYLFS*RPFSKKKKEI 345
EP + + PPL+ SSI+ T + P++P + F +LF+ SY + S + +
Sbjct: 155 EPSSAPITPPLDD---SSIYLTTTTPSSPEVPFAQLFNSNHQTGSYGYKFPMSSSYEFQF 211
Query: 346 KYSPPKQP*DQLISVGP 396
PP P QLIS P
Sbjct: 212 YQLPPGSPLGQLISPSP 228
>gb|AAM93416.1|AF450324_1 core protein NTPase/VP5 [golden ide reovirus]
Length = 728
Score = 33.5 bits (75), Expect = 1.1
Identities = 21/56 (37%), Positives = 27/56 (47%)
Frame = +1
Query: 139 VCCLHC*LFPEPLNIILKPPLNHKTKSSIFPTASLPTNPIFFCKLFSLQLHPNSYL 306
VC L C L PEPLN PP H T ++ P+ L I K + L+L Y+
Sbjct: 289 VCDLQCALSPEPLNTTDSPPATHITIHAV-PSDLLTVLDITVGKEYPLRLESGMYV 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,964,174
Number of Sequences: 1393205
Number of extensions: 8433906
Number of successful extensions: 15302
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15294
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
