Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004017A_C01 KMC004017A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98170.1| RAB7C [Lotus japonicus] 215 3e-55
sp|P31022|RAB7_PEA Ras-related protein Rab7 gi|485497|pir||S3353... 205 3e-52
pir||T03629 GTP-binding protein Rab7b - common tobacco gi|623590... 202 3e-51
ref|NP_188512.1| GTP-binding protein, putative; protein id: At3g... 200 1e-50
gb|AAM60858.1| GTP binding protein, putative [Arabidopsis thaliana] 196 3e-49
>emb|CAA98170.1| RAB7C [Lotus japonicus]
Length = 206
Score = 215 bits (548), Expect = 3e-55
Identities = 104/105 (99%), Positives = 104/105 (99%)
Frame = -1
Query: 622 WREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 443
WREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAK
Sbjct: 102 WREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKG 161
Query: 442 GINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC 308
GINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC
Sbjct: 162 GINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC 206
>sp|P31022|RAB7_PEA Ras-related protein Rab7 gi|485497|pir||S33531 GTP-binding protein
rab - garden pea gi|20756|emb|CAA46600.1| RAS-related
GTP-binding protein [Pisum sativum]
Length = 206
Score = 205 bits (522), Expect = 3e-52
Identities = 98/105 (93%), Positives = 103/105 (97%)
Frame = -1
Query: 622 WREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 443
WREEFLIQA+PSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCA+KGNIPYFETSAKE
Sbjct: 102 WREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKE 161
Query: 442 GINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC 308
GINVEEAFQ IAK+ALKSGEEEELYLPDTIDVGNSSQ R++GCEC
Sbjct: 162 GINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSSQPRSTGCEC 206
>pir||T03629 GTP-binding protein Rab7b - common tobacco gi|623590|gb|AAA74119.1|
putative
Length = 205
Score = 202 bits (514), Expect = 3e-51
Identities = 95/105 (90%), Positives = 99/105 (93%)
Frame = -1
Query: 622 WREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 443
WREEFLIQASPSDPENFPFVV+GNK+DIDGGNSRVVSEKKARAWCASKGNIPYFETSAKE
Sbjct: 101 WREEFLIQASPSDPENFPFVVLGNKVDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 160
Query: 442 GINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC 308
G VEEAFQCIAKNALKSGEEEE+YLPDT+DVG SSQ R GCEC
Sbjct: 161 GTFVEEAFQCIAKNALKSGEEEEIYLPDTLDVGTSSQPRTGGCEC 205
>ref|NP_188512.1| GTP-binding protein, putative; protein id: At3g18820.1, supported
by cDNA: 101693., supported by cDNA: gi_14334927,
supported by cDNA: gi_15718407, supported by cDNA:
gi_16323367 [Arabidopsis thaliana]
gi|9293907|dbj|BAB01810.1| RAS-related GTP-binding
protein [Arabidopsis thaliana]
gi|14334928|gb|AAK59641.1| putative GTP binding protein
[Arabidopsis thaliana] gi|15718408|dbj|BAB68371.1|
AtRab71 [Arabidopsis thaliana]
gi|16323368|gb|AAL15178.1| putative GTP binding protein
[Arabidopsis thaliana]
Length = 206
Score = 200 bits (508), Expect = 1e-50
Identities = 93/105 (88%), Positives = 101/105 (95%)
Frame = -1
Query: 622 WREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 443
WREEFLIQASPSDPENFPFV+IGNK+D+D GNSRVVSEKKA+AWCASKGNIPYFETSAK
Sbjct: 102 WREEFLIQASPSDPENFPFVLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKV 161
Query: 442 GINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC 308
G NVEEAFQCIAK+ALKSGEEEELYLPDTIDVG S+QQR++GCEC
Sbjct: 162 GTNVEEAFQCIAKDALKSGEEEELYLPDTIDVGTSNQQRSTGCEC 206
>gb|AAM60858.1| GTP binding protein, putative [Arabidopsis thaliana]
Length = 206
Score = 196 bits (497), Expect = 3e-49
Identities = 92/104 (88%), Positives = 100/104 (95%)
Frame = -1
Query: 619 REEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 440
REEFLIQASPSDPENFPFV+IGNK+D+D GNSRVVSEKKA+AWCASKGNIPYFETSAK G
Sbjct: 103 REEFLIQASPSDPENFPFVLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKVG 162
Query: 439 INVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQQRASGCEC 308
NVEEAFQCIAK+ALKSGEEEELYLPDTIDVG S+QQR++GCEC
Sbjct: 163 TNVEEAFQCIAKDALKSGEEEELYLPDTIDVGTSNQQRSTGCEC 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,933,386
Number of Sequences: 1393205
Number of extensions: 11976437
Number of successful extensions: 28334
Number of sequences better than 10.0: 1137
Number of HSP's better than 10.0 without gapping: 27179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28059
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
