Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004015A_C01 KMC004015A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA11854.1| agCP5888 [Anopheles gambiae str. PEST] 32 3.3
ref|XP_145685.2| similar to glyceraldehyde-3-phosphate dehydroge... 32 4.3
ref|XP_156472.1| hypothetical protein XP_156472 [Mus musculus] 32 4.3
pir||S62456 probable serine-threonine-protein kinase - fission y... 32 5.6
sp|Q09815|KAB7_SCHPO Probable serine/threonine-protein kinase C1... 32 5.6
>gb|EAA11854.1| agCP5888 [Anopheles gambiae str. PEST]
Length = 3646
Score = 32.3 bits (72), Expect = 3.3
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = -1
Query: 403 FVAPRGQVCKINSQV--NRGTTTTNIAKRYCTAMNWRHFWLCSTCLFLRFYSKSSVF*YY 230
F + ++C+ + N GT + YC N+ S L+LRFYS SS Y
Sbjct: 1016 FKMEKHRICRFDGLTIRNGGTQNAPLIGNYCGEDNFNGTISFSHQLYLRFYSDSSR--NY 1073
Query: 229 TTFFLSWCMRTTVLG 185
F + W TT G
Sbjct: 1074 AGFMIEWDSATTGCG 1088
>ref|XP_145685.2| similar to glyceraldehyde-3-phosphate dehydrogenase [Mus musculus]
Length = 463
Score = 32.0 bits (71), Expect = 4.3
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = +3
Query: 75 FLQITV*NVILHQVETQTKTYTTCYFVSSLLHLVQGRPSTVVLMHQD 215
F+ T I H ++ + + TC + S + HL+QG + VV M Q+
Sbjct: 60 FMGTTTIYTIKHVIDLRFSCFWTCQYKSGIQHLLQGLETPVVYMGQE 106
>ref|XP_156472.1| hypothetical protein XP_156472 [Mus musculus]
Length = 226
Score = 32.0 bits (71), Expect = 4.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 500 ETNSQIKQNQLSLHYEIGIPWKKGSIISDAINVCGTQGT 384
+ N+ +K+ Q SLH EIG+ W + +DA + +G+
Sbjct: 128 QNNNTLKRPQRSLHCEIGVHWAAPGVHTDASGITEVKGS 166
>pir||S62456 probable serine-threonine-protein kinase - fission yeast
(Schizosaccharomyces pombe) (fragment)
gi|1019399|emb|CAA91166.1| putative serine/threonine
protein kinase [Schizosaccharomyces pombe]
Length = 543
Score = 31.6 bits (70), Expect = 5.6
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3
Query: 113 LMKNNILYCDL*KVNLIEYSPLYAFRVKLIEYTSLC 6
L NI++CDL NL+ PL A R+KLI++ S C
Sbjct: 342 LQGQNIIHCDLKPENLLLSHPLKA-RIKLIDFGSSC 376
>sp|Q09815|KAB7_SCHPO Probable serine/threonine-protein kinase C16C9.07
Length = 836
Score = 31.6 bits (70), Expect = 5.6
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3
Query: 113 LMKNNILYCDL*KVNLIEYSPLYAFRVKLIEYTSLC 6
L NI++CDL NL+ PL A R+KLI++ S C
Sbjct: 635 LQGQNIIHCDLKPENLLLSHPLKA-RIKLIDFGSSC 669
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,970,809
Number of Sequences: 1393205
Number of extensions: 8196055
Number of successful extensions: 19072
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19070
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
