Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004014A_C01 KMC004014A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_287730.1| hypothetical protein XP_287730 [Mus musculus] 37 0.12
ref|XP_287399.1| hypothetical protein XP_287399 [Mus musculus] 32 4.9
dbj|BAC40809.1| unnamed protein product [Mus musculus] 31 6.4
ref|XP_286870.1| hypothetical protein XP_286870 [Mus musculus] 31 8.3
ref|XP_287838.1| hypothetical protein XP_287838 [Mus musculus] 31 8.3
>ref|XP_287730.1| hypothetical protein XP_287730 [Mus musculus]
Length = 100
Score = 37.0 bits (84), Expect = 0.12
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +1
Query: 10 QYRHEQSSMQNRERLNSNLCKQVYIITYQNKQ*---YLIQYCELNFIQRTP*N---IIFL 171
Q+R + + + +++ Y+I Y + Y + Y L+ + P + ++F
Sbjct: 3 QFRRKSDIIVSYTHTHTHTHTHTYVIVYNSHTHIFHYPLLYLSLHLYKLFPSHRSFLLFS 62
Query: 172 ASLSLSLSLSLS*LHINLHIHKH 240
SLSLSLSLSLS H + H H H
Sbjct: 63 LSLSLSLSLSLSLTHTHTHTHTH 85
>ref|XP_287399.1| hypothetical protein XP_287399 [Mus musculus]
Length = 93
Score = 31.6 bits (70), Expect = 4.9
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 166 FLASLSLSLSLSLS*LHINLHIHKH 240
F SLSLSLSLSL+ H + H H H
Sbjct: 68 FFLSLSLSLSLSLTHTHTHTHTHTH 92
>dbj|BAC40809.1| unnamed protein product [Mus musculus]
Length = 106
Score = 31.2 bits (69), Expect = 6.4
Identities = 20/38 (52%), Positives = 24/38 (62%)
Frame = +1
Query: 175 SLSLSLSLSLS*LHINLHIHKH*IRIYKVIFQLYN*YM 288
SLSLSLSLSLS H + H H H IY ++ YN Y+
Sbjct: 34 SLSLSLSLSLSLTHTHTHTHTH---IYTHMY--YNLYI 66
>ref|XP_286870.1| hypothetical protein XP_286870 [Mus musculus]
Length = 122
Score = 30.8 bits (68), Expect = 8.3
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1
Query: 175 SLSLSLSLSLS*LHINLHIHKH 240
SLSLSLSLSLS H + H H H
Sbjct: 29 SLSLSLSLSLSHTHTHTHTHTH 50
>ref|XP_287838.1| hypothetical protein XP_287838 [Mus musculus]
Length = 111
Score = 30.8 bits (68), Expect = 8.3
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1
Query: 175 SLSLSLSLSLS*LHINLHIHKH 240
SLSLSLSLSLS H + H H H
Sbjct: 46 SLSLSLSLSLSHTHTHTHTHTH 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,865,776
Number of Sequences: 1393205
Number of extensions: 7257629
Number of successful extensions: 19458
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18132
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
